miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24837 5' -56.2 NC_005284.1 + 19316 0.66 0.651889
Target:  5'- ------gGCAUCGAUCG-GCGUGGGc -3'
miRNA:   3'- aaaacgaCGUGGCUAGCuCGCGCCCu -5'
24837 5' -56.2 NC_005284.1 + 44874 0.66 0.640798
Target:  5'- ---cGCUGCugCG--CGAGCGCGaGcGAc -3'
miRNA:   3'- aaaaCGACGugGCuaGCUCGCGC-C-CU- -5'
24837 5' -56.2 NC_005284.1 + 30349 0.66 0.640798
Target:  5'- ---cGUUGagaucgaGgCGAUCGAGCGCGaGGGc -3'
miRNA:   3'- aaaaCGACg------UgGCUAGCUCGCGC-CCU- -5'
24837 5' -56.2 NC_005284.1 + 15498 0.66 0.618602
Target:  5'- ---cGCgGCGucgcguuacCCGAcuUCGAGCGCGaGGAc -3'
miRNA:   3'- aaaaCGaCGU---------GGCU--AGCUCGCGC-CCU- -5'
24837 5' -56.2 NC_005284.1 + 39523 0.66 0.618602
Target:  5'- ---gGCUGUGCCGAU---GCGcCGGGAu -3'
miRNA:   3'- aaaaCGACGUGGCUAgcuCGC-GCCCU- -5'
24837 5' -56.2 NC_005284.1 + 53020 0.66 0.618602
Target:  5'- ---cGCUGCACUGcaaGUCGAugaGCGGGc -3'
miRNA:   3'- aaaaCGACGUGGC---UAGCUcg-CGCCCu -5'
24837 5' -56.2 NC_005284.1 + 17749 0.66 0.596455
Target:  5'- ---gGC-GCACCGGcUCGGGCGCuGGc -3'
miRNA:   3'- aaaaCGaCGUGGCU-AGCUCGCGcCCu -5'
24837 5' -56.2 NC_005284.1 + 53790 0.66 0.596455
Target:  5'- ---gGCUGCugCGG-CGAGCGCa--- -3'
miRNA:   3'- aaaaCGACGugGCUaGCUCGCGcccu -5'
24837 5' -56.2 NC_005284.1 + 5956 0.67 0.552598
Target:  5'- --gUGCUcGCACCaGUCGAGCcacgcgucGaCGGGAa -3'
miRNA:   3'- aaaACGA-CGUGGcUAGCUCG--------C-GCCCU- -5'
24837 5' -56.2 NC_005284.1 + 36695 0.67 0.541774
Target:  5'- --cUGCUGCGCCG--CGAGCucGCGGc- -3'
miRNA:   3'- aaaACGACGUGGCuaGCUCG--CGCCcu -5'
24837 5' -56.2 NC_005284.1 + 16013 0.67 0.541774
Target:  5'- ---aGCUcgaGCAuCCGGUCGGGCGCGa-- -3'
miRNA:   3'- aaaaCGA---CGU-GGCUAGCUCGCGCccu -5'
24837 5' -56.2 NC_005284.1 + 33490 0.68 0.48886
Target:  5'- ---cGCUGCuGCCGAcauagCGGGgaaGCGGGAu -3'
miRNA:   3'- aaaaCGACG-UGGCUa----GCUCg--CGCCCU- -5'
24837 5' -56.2 NC_005284.1 + 16045 0.68 0.48886
Target:  5'- ---cGCauUGCGCCGGuaaUCGucggcaguaAGCGCGGGGg -3'
miRNA:   3'- aaaaCG--ACGUGGCU---AGC---------UCGCGCCCU- -5'
24837 5' -56.2 NC_005284.1 + 43371 0.68 0.482669
Target:  5'- -cUUGCUGCGCagauccgucaccuuuUGAUCGAaCGCGaGGAg -3'
miRNA:   3'- aaAACGACGUG---------------GCUAGCUcGCGC-CCU- -5'
24837 5' -56.2 NC_005284.1 + 46075 0.68 0.478563
Target:  5'- --cUGC-GCGCCGcGUCGAGCGCGc-- -3'
miRNA:   3'- aaaACGaCGUGGC-UAGCUCGCGCccu -5'
24837 5' -56.2 NC_005284.1 + 33161 0.69 0.468373
Target:  5'- ---cGCUGC-UCGGcgUCGAGCGCGGc- -3'
miRNA:   3'- aaaaCGACGuGGCU--AGCUCGCGCCcu -5'
24837 5' -56.2 NC_005284.1 + 11422 0.69 0.462313
Target:  5'- ---cGCUGCGUCGAUCGcgaaaaccgccugucGGgGCGGGGa -3'
miRNA:   3'- aaaaCGACGUGGCUAGC---------------UCgCGCCCU- -5'
24837 5' -56.2 NC_005284.1 + 43943 0.69 0.438496
Target:  5'- --aUGCUGCGCggCGAcgaGAGCuuGCGGGAg -3'
miRNA:   3'- aaaACGACGUG--GCUag-CUCG--CGCCCU- -5'
24837 5' -56.2 NC_005284.1 + 30842 0.69 0.428781
Target:  5'- --aUGCaaaGCcCCGGUCGAGCGacCGGGGc -3'
miRNA:   3'- aaaACGa--CGuGGCUAGCUCGC--GCCCU- -5'
24837 5' -56.2 NC_005284.1 + 45211 0.7 0.409739
Target:  5'- --gUGUcgaacgGCACgaGAUCGAGCGCGuGGAu -3'
miRNA:   3'- aaaACGa-----CGUGg-CUAGCUCGCGC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.