Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24837 | 5' | -56.2 | NC_005284.1 | + | 19458 | 0.76 | 0.172208 |
Target: 5'- uUUUUGCggcagGCGCUGAUCG-GUGCGGGc -3' miRNA: 3'- -AAAACGa----CGUGGCUAGCuCGCGCCCu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 19316 | 0.66 | 0.651889 |
Target: 5'- ------gGCAUCGAUCG-GCGUGGGc -3' miRNA: 3'- aaaacgaCGUGGCUAGCuCGCGCCCu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 30349 | 0.66 | 0.640798 |
Target: 5'- ---cGUUGagaucgaGgCGAUCGAGCGCGaGGGc -3' miRNA: 3'- aaaaCGACg------UgGCUAGCUCGCGC-CCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 15498 | 0.66 | 0.618602 |
Target: 5'- ---cGCgGCGucgcguuacCCGAcuUCGAGCGCGaGGAc -3' miRNA: 3'- aaaaCGaCGU---------GGCU--AGCUCGCGC-CCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 53020 | 0.66 | 0.618602 |
Target: 5'- ---cGCUGCACUGcaaGUCGAugaGCGGGc -3' miRNA: 3'- aaaaCGACGUGGC---UAGCUcg-CGCCCu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 53790 | 0.66 | 0.596455 |
Target: 5'- ---gGCUGCugCGG-CGAGCGCa--- -3' miRNA: 3'- aaaaCGACGugGCUaGCUCGCGcccu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 17749 | 0.66 | 0.596455 |
Target: 5'- ---gGC-GCACCGGcUCGGGCGCuGGc -3' miRNA: 3'- aaaaCGaCGUGGCU-AGCUCGCGcCCu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 16013 | 0.67 | 0.541774 |
Target: 5'- ---aGCUcgaGCAuCCGGUCGGGCGCGa-- -3' miRNA: 3'- aaaaCGA---CGU-GGCUAGCUCGCGCccu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 33490 | 0.68 | 0.48886 |
Target: 5'- ---cGCUGCuGCCGAcauagCGGGgaaGCGGGAu -3' miRNA: 3'- aaaaCGACG-UGGCUa----GCUCg--CGCCCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 16045 | 0.68 | 0.48886 |
Target: 5'- ---cGCauUGCGCCGGuaaUCGucggcaguaAGCGCGGGGg -3' miRNA: 3'- aaaaCG--ACGUGGCU---AGC---------UCGCGCCCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 43943 | 0.69 | 0.438496 |
Target: 5'- --aUGCUGCGCggCGAcgaGAGCuuGCGGGAg -3' miRNA: 3'- aaaACGACGUG--GCUag-CUCG--CGCCCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 45211 | 0.7 | 0.409739 |
Target: 5'- --gUGUcgaacgGCACgaGAUCGAGCGCGuGGAu -3' miRNA: 3'- aaaACGa-----CGUGg-CUAGCUCGCGC-CCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 26405 | 0.7 | 0.391232 |
Target: 5'- ---gGCUGCGCCGcuUCGAG-GUGGGc -3' miRNA: 3'- aaaaCGACGUGGCu-AGCUCgCGCCCu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 39230 | 0.74 | 0.219608 |
Target: 5'- --aUGCUGCGCuCGAUCgucguGAGCGUGGuGAu -3' miRNA: 3'- aaaACGACGUG-GCUAG-----CUCGCGCC-CU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 46075 | 0.68 | 0.478563 |
Target: 5'- --cUGC-GCGCCGcGUCGAGCGCGc-- -3' miRNA: 3'- aaaACGaCGUGGC-UAGCUCGCGCccu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 43371 | 0.68 | 0.482669 |
Target: 5'- -cUUGCUGCGCagauccgucaccuuuUGAUCGAaCGCGaGGAg -3' miRNA: 3'- aaAACGACGUG---------------GCUAGCUcGCGC-CCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 36695 | 0.67 | 0.541774 |
Target: 5'- --cUGCUGCGCCG--CGAGCucGCGGc- -3' miRNA: 3'- aaaACGACGUGGCuaGCUCG--CGCCcu -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 5956 | 0.67 | 0.552598 |
Target: 5'- --gUGCUcGCACCaGUCGAGCcacgcgucGaCGGGAa -3' miRNA: 3'- aaaACGA-CGUGGcUAGCUCG--------C-GCCCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 39523 | 0.66 | 0.618602 |
Target: 5'- ---gGCUGUGCCGAU---GCGcCGGGAu -3' miRNA: 3'- aaaaCGACGUGGCUAgcuCGC-GCCCU- -5' |
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24837 | 5' | -56.2 | NC_005284.1 | + | 39884 | 1.06 | 0.001053 |
Target: 5'- uUUUUGCUGCACCGAUCGAGCGCGGGAu -3' miRNA: 3'- -AAAACGACGUGGCUAGCUCGCGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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