Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24838 | 3' | -52.1 | NC_005284.1 | + | 30056 | 0.69 | 0.718917 |
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Target: 5'- gGAGUGcUACGAUCGCCCcggUUCGUu- -3' miRNA: 3'- -CUCGCuGUGCUAGUGGGua-AAGCGcu -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 26347 | 0.69 | 0.729766 |
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Target: 5'- -cGCGGCACGGUCAacgCCGg--CGCGc -3' miRNA: 3'- cuCGCUGUGCUAGUg--GGUaaaGCGCu -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 15106 | 0.69 | 0.740513 |
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Target: 5'- -cGCGGCGCGcuugucgagCACCUGUUgCGCGAa -3' miRNA: 3'- cuCGCUGUGCua-------GUGGGUAAaGCGCU- -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 32940 | 0.69 | 0.740513 |
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Target: 5'- cGGCGGCACcAUCGCCCAcgccgGCGGc -3' miRNA: 3'- cUCGCUGUGcUAGUGGGUaaag-CGCU- -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 950 | 0.69 | 0.740513 |
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Target: 5'- uGGCGG-GCGAUCACCCcgUUCGa-- -3' miRNA: 3'- cUCGCUgUGCUAGUGGGuaAAGCgcu -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 38491 | 0.7 | 0.68588 |
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Target: 5'- cGAGCGGCAcCGGcUCGCCCug--CGCa- -3' miRNA: 3'- -CUCGCUGU-GCU-AGUGGGuaaaGCGcu -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 18024 | 0.71 | 0.585075 |
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Target: 5'- cGGCGACACGGUCACgC---UCGcCGAg -3' miRNA: 3'- cUCGCUGUGCUAGUGgGuaaAGC-GCU- -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 45204 | 0.74 | 0.456496 |
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Target: 5'- cGGCaGCGCGAUCGCCCugcgcUUUgGCGAg -3' miRNA: 3'- cUCGcUGUGCUAGUGGGu----AAAgCGCU- -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 53661 | 0.74 | 0.446436 |
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Target: 5'- uGGCGACGCGccGUCGCCCGggUUGCc- -3' miRNA: 3'- cUCGCUGUGC--UAGUGGGUaaAGCGcu -5' |
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| 24838 | 3' | -52.1 | NC_005284.1 | + | 39458 | 1.09 | 0.002014 |
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Target: 5'- cGAGCGACACGAUCACCCAUUUCGCGAu -3' miRNA: 3'- -CUCGCUGUGCUAGUGGGUAAAGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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