miRNA display CGI


Results 21 - 30 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24838 3' -52.1 NC_005284.1 + 7660 0.66 0.8572
Target:  5'- uGGGCGGCGuCGGUCaauggGCUgAUUUCgGCGAc -3'
miRNA:   3'- -CUCGCUGU-GCUAG-----UGGgUAAAG-CGCU- -5'
24838 3' -52.1 NC_005284.1 + 28018 0.66 0.8572
Target:  5'- cGGGCGACAUGGUUgcaGCgCCAgcacCGUGAu -3'
miRNA:   3'- -CUCGCUGUGCUAG---UG-GGUaaa-GCGCU- -5'
24838 3' -52.1 NC_005284.1 + 26423 0.66 0.865565
Target:  5'- uGGGCGACgACGaAUUGCUCAg--UGCGAa -3'
miRNA:   3'- -CUCGCUG-UGC-UAGUGGGUaaaGCGCU- -5'
24838 3' -52.1 NC_005284.1 + 8352 0.66 0.865565
Target:  5'- cGGCGACgGCGAUCGgUUcgUUCGCu- -3'
miRNA:   3'- cUCGCUG-UGCUAGUgGGuaAAGCGcu -5'
24838 3' -52.1 NC_005284.1 + 44174 0.66 0.872877
Target:  5'- -cGcCGACACGAagcggucgaucagUCGCCCGaucucgCGCGAu -3'
miRNA:   3'- cuC-GCUGUGCU-------------AGUGGGUaaa---GCGCU- -5'
24838 3' -52.1 NC_005284.1 + 19266 0.66 0.873677
Target:  5'- -cGCGACACGGgaaUCGCUCuucgacggcuucGUUUCGCu- -3'
miRNA:   3'- cuCGCUGUGCU---AGUGGG------------UAAAGCGcu -5'
24838 3' -52.1 NC_005284.1 + 28881 0.66 0.881528
Target:  5'- aAGCGGCGCGcagCAUCaaagaacaGUUUUGCGAa -3'
miRNA:   3'- cUCGCUGUGCua-GUGGg-------UAAAGCGCU- -5'
24838 3' -52.1 NC_005284.1 + 53567 0.66 0.881528
Target:  5'- uGAGCGGCugccgGCGcgCGCCCAUgccggUCaGCa- -3'
miRNA:   3'- -CUCGCUG-----UGCuaGUGGGUAa----AG-CGcu -5'
24838 3' -52.1 NC_005284.1 + 27043 0.66 0.889113
Target:  5'- gGGGCGGCACGAUCGauuUCC--UUCuCGAc -3'
miRNA:   3'- -CUCGCUGUGCUAGU---GGGuaAAGcGCU- -5'
24838 3' -52.1 NC_005284.1 + 44890 0.66 0.889856
Target:  5'- cGAGCGACGCuucggcgcgcuGAgcuccugcugugcggCugCCGUcUCGCGAg -3'
miRNA:   3'- -CUCGCUGUG-----------CUa--------------GugGGUAaAGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.