miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24838 5' -58 NC_005284.1 + 39762 0.66 0.625951
Target:  5'- aCCCGC-CGUUugGCgGGUCCUCGUa- -3'
miRNA:   3'- cGGGCGuGUAGcaCG-CCAGGAGCAgc -5'
24838 5' -58 NC_005284.1 + 21671 0.66 0.60462
Target:  5'- -gCCGcCGCGUCG-GCGGUggCCgcCGUCGa -3'
miRNA:   3'- cgGGC-GUGUAGCaCGCCA--GGa-GCAGC- -5'
24838 5' -58 NC_005284.1 + 26658 0.66 0.593983
Target:  5'- aGCCCGC-CAcCGUGCGGgCUUUuUCa -3'
miRNA:   3'- -CGGGCGuGUaGCACGCCaGGAGcAGc -5'
24838 5' -58 NC_005284.1 + 5292 0.66 0.572808
Target:  5'- uGCUCGCACuUCGUguuGCGGUaCUUCGa-- -3'
miRNA:   3'- -CGGGCGUGuAGCA---CGCCA-GGAGCagc -5'
24838 5' -58 NC_005284.1 + 15106 0.67 0.562286
Target:  5'- aUCCGCGCGagUGcUGCGGg-CUCGUCGu -3'
miRNA:   3'- cGGGCGUGUa-GC-ACGCCagGAGCAGC- -5'
24838 5' -58 NC_005284.1 + 33841 0.67 0.541407
Target:  5'- cGCCUcgacuucaucgaGCGCuUUGUGUGuGUCgUCGUCGa -3'
miRNA:   3'- -CGGG------------CGUGuAGCACGC-CAGgAGCAGC- -5'
24838 5' -58 NC_005284.1 + 10938 0.67 0.531064
Target:  5'- gGCCCGCAUGgc---CGG-CCUCGUCGc -3'
miRNA:   3'- -CGGGCGUGUagcacGCCaGGAGCAGC- -5'
24838 5' -58 NC_005284.1 + 145 0.67 0.510601
Target:  5'- -aCgGCAgAUCGcuUGCaGGUUCUCGUCGu -3'
miRNA:   3'- cgGgCGUgUAGC--ACG-CCAGGAGCAGC- -5'
24838 5' -58 NC_005284.1 + 1141 0.68 0.490474
Target:  5'- cGCCUGCACAgUCGUaacGCaauGUCgCUCGUCu -3'
miRNA:   3'- -CGGGCGUGU-AGCA---CGc--CAG-GAGCAGc -5'
24838 5' -58 NC_005284.1 + 4574 0.68 0.480549
Target:  5'- aGCgCGCGCAaaUCaGUGCGcGUUCgCGUCGa -3'
miRNA:   3'- -CGgGCGUGU--AG-CACGC-CAGGaGCAGC- -5'
24838 5' -58 NC_005284.1 + 35619 0.68 0.480549
Target:  5'- cGCCUGUACAgUCGUGauGUCCUgCGcCa -3'
miRNA:   3'- -CGGGCGUGU-AGCACgcCAGGA-GCaGc -5'
24838 5' -58 NC_005284.1 + 13183 0.69 0.441882
Target:  5'- aGCUCGCAC-UCGgcGCGG-CCUCG-CGc -3'
miRNA:   3'- -CGGGCGUGuAGCa-CGCCaGGAGCaGC- -5'
24838 5' -58 NC_005284.1 + 8596 0.69 0.423219
Target:  5'- -aCCGcCGCAU-GcGCGGUCuCUCGUCGa -3'
miRNA:   3'- cgGGC-GUGUAgCaCGCCAG-GAGCAGC- -5'
24838 5' -58 NC_005284.1 + 36270 0.69 0.414066
Target:  5'- uGCUCGCugAagGUcgaguacgaGCGGaguUCCUCGUCGa -3'
miRNA:   3'- -CGGGCGugUagCA---------CGCC---AGGAGCAGC- -5'
24838 5' -58 NC_005284.1 + 7345 0.7 0.378707
Target:  5'- gGCCCgGUugAUCG-GCGaGUCCUCuUCGc -3'
miRNA:   3'- -CGGG-CGugUAGCaCGC-CAGGAGcAGC- -5'
24838 5' -58 NC_005284.1 + 17713 0.71 0.321884
Target:  5'- cGCCgGCGCGUCGaugGCGGUCgaggaCGUCu -3'
miRNA:   3'- -CGGgCGUGUAGCa--CGCCAGga---GCAGc -5'
24838 5' -58 NC_005284.1 + 28135 0.73 0.233823
Target:  5'- aGCCCGCACggUG-GCGGgcuUCCUCG-CGa -3'
miRNA:   3'- -CGGGCGUGuaGCaCGCC---AGGAGCaGC- -5'
24838 5' -58 NC_005284.1 + 39493 1.11 0.000436
Target:  5'- cGCCCGCACAUCGUGCGGUCCUCGUCGg -3'
miRNA:   3'- -CGGGCGUGUAGCACGCCAGGAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.