Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24838 | 5' | -58 | NC_005284.1 | + | 39493 | 1.11 | 0.000436 |
Target: 5'- cGCCCGCACAUCGUGCGGUCCUCGUCGg -3' miRNA: 3'- -CGGGCGUGUAGCACGCCAGGAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 28135 | 0.73 | 0.233823 |
Target: 5'- aGCCCGCACggUG-GCGGgcuUCCUCG-CGa -3' miRNA: 3'- -CGGGCGUGuaGCaCGCC---AGGAGCaGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 17713 | 0.71 | 0.321884 |
Target: 5'- cGCCgGCGCGUCGaugGCGGUCgaggaCGUCu -3' miRNA: 3'- -CGGgCGUGUAGCa--CGCCAGga---GCAGc -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 7345 | 0.7 | 0.378707 |
Target: 5'- gGCCCgGUugAUCG-GCGaGUCCUCuUCGc -3' miRNA: 3'- -CGGG-CGugUAGCaCGC-CAGGAGcAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 13183 | 0.69 | 0.441882 |
Target: 5'- aGCUCGCAC-UCGgcGCGG-CCUCG-CGc -3' miRNA: 3'- -CGGGCGUGuAGCa-CGCCaGGAGCaGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 36270 | 0.69 | 0.414066 |
Target: 5'- uGCUCGCugAagGUcgaguacgaGCGGaguUCCUCGUCGa -3' miRNA: 3'- -CGGGCGugUagCA---------CGCC---AGGAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 8596 | 0.69 | 0.423219 |
Target: 5'- -aCCGcCGCAU-GcGCGGUCuCUCGUCGa -3' miRNA: 3'- cgGGC-GUGUAgCaCGCCAG-GAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 4574 | 0.68 | 0.480549 |
Target: 5'- aGCgCGCGCAaaUCaGUGCGcGUUCgCGUCGa -3' miRNA: 3'- -CGgGCGUGU--AG-CACGC-CAGGaGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 1141 | 0.68 | 0.490474 |
Target: 5'- cGCCUGCACAgUCGUaacGCaauGUCgCUCGUCu -3' miRNA: 3'- -CGGGCGUGU-AGCA---CGc--CAG-GAGCAGc -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 35619 | 0.68 | 0.480549 |
Target: 5'- cGCCUGUACAgUCGUGauGUCCUgCGcCa -3' miRNA: 3'- -CGGGCGUGU-AGCACgcCAGGA-GCaGc -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 15106 | 0.67 | 0.562286 |
Target: 5'- aUCCGCGCGagUGcUGCGGg-CUCGUCGu -3' miRNA: 3'- cGGGCGUGUa-GC-ACGCCagGAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 33841 | 0.67 | 0.541407 |
Target: 5'- cGCCUcgacuucaucgaGCGCuUUGUGUGuGUCgUCGUCGa -3' miRNA: 3'- -CGGG------------CGUGuAGCACGC-CAGgAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 10938 | 0.67 | 0.531064 |
Target: 5'- gGCCCGCAUGgc---CGG-CCUCGUCGc -3' miRNA: 3'- -CGGGCGUGUagcacGCCaGGAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 145 | 0.67 | 0.510601 |
Target: 5'- -aCgGCAgAUCGcuUGCaGGUUCUCGUCGu -3' miRNA: 3'- cgGgCGUgUAGC--ACG-CCAGGAGCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 5292 | 0.66 | 0.572808 |
Target: 5'- uGCUCGCACuUCGUguuGCGGUaCUUCGa-- -3' miRNA: 3'- -CGGGCGUGuAGCA---CGCCA-GGAGCagc -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 39762 | 0.66 | 0.625951 |
Target: 5'- aCCCGC-CGUUugGCgGGUCCUCGUa- -3' miRNA: 3'- cGGGCGuGUAGcaCG-CCAGGAGCAgc -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 21671 | 0.66 | 0.60462 |
Target: 5'- -gCCGcCGCGUCG-GCGGUggCCgcCGUCGa -3' miRNA: 3'- cgGGC-GUGUAGCaCGCCA--GGa-GCAGC- -5' |
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24838 | 5' | -58 | NC_005284.1 | + | 26658 | 0.66 | 0.593983 |
Target: 5'- aGCCCGC-CAcCGUGCGGgCUUUuUCa -3' miRNA: 3'- -CGGGCGuGUaGCACGCCaGGAGcAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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