miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24839 3' -55.7 NC_005284.1 + 45157 0.66 0.702075
Target:  5'- gGUCGaCGCACGG-CGaCGUcgGGCAGgagaUCGUg -3'
miRNA:   3'- -CAGC-GCGUGCUaGC-GCA--UCGUC----AGCA- -5'
24839 3' -55.7 NC_005284.1 + 24436 0.66 0.695602
Target:  5'- cUCGCGCuCGAUCGCcucgaucucaacgucGUAGCcgcGGUaCGUg -3'
miRNA:   3'- cAGCGCGuGCUAGCG---------------CAUCG---UCA-GCA- -5'
24839 3' -55.7 NC_005284.1 + 37452 0.66 0.691274
Target:  5'- cGUCGCaguaacGCGCGAUUGCGUA-CAG-CGc -3'
miRNA:   3'- -CAGCG------CGUGCUAGCGCAUcGUCaGCa -5'
24839 3' -55.7 NC_005284.1 + 17690 0.66 0.669512
Target:  5'- aUCGUGCGCGAcgcccugaaucUCGCcGgcgcgucgaUGGCGGUCGa -3'
miRNA:   3'- cAGCGCGUGCU-----------AGCG-C---------AUCGUCAGCa -5'
24839 3' -55.7 NC_005284.1 + 31103 0.66 0.658574
Target:  5'- -aCGCGCGCGGguacUGCG-AGCAGcuUCGg -3'
miRNA:   3'- caGCGCGUGCUa---GCGCaUCGUC--AGCa -5'
24839 3' -55.7 NC_005284.1 + 6848 0.67 0.646514
Target:  5'- -gCGCGCGCGAUCGauCGUgugcucggagggcGGCGGUgagCGUg -3'
miRNA:   3'- caGCGCGUGCUAGC--GCA-------------UCGUCA---GCA- -5'
24839 3' -55.7 NC_005284.1 + 36629 0.67 0.625653
Target:  5'- cGUCGCGU-UGAUCGUGUagacgaucuGGCcGUCGUc -3'
miRNA:   3'- -CAGCGCGuGCUAGCGCA---------UCGuCAGCA- -5'
24839 3' -55.7 NC_005284.1 + 10390 0.67 0.622359
Target:  5'- -cUGCGCACGAagcaagaggcgUCGCGggcggccgaugacgcGCAGUCGg -3'
miRNA:   3'- caGCGCGUGCU-----------AGCGCau-------------CGUCAGCa -5'
24839 3' -55.7 NC_005284.1 + 30881 0.68 0.592782
Target:  5'- --aGCGCACuGGUCGCGcAGCgaccgagcccAGUCGg -3'
miRNA:   3'- cagCGCGUG-CUAGCGCaUCG----------UCAGCa -5'
24839 3' -55.7 NC_005284.1 + 53516 0.68 0.592782
Target:  5'- uGUCGaaGCACGGccccucgauguUCGCGcccGCAGUCGUg -3'
miRNA:   3'- -CAGCg-CGUGCU-----------AGCGCau-CGUCAGCA- -5'
24839 3' -55.7 NC_005284.1 + 47758 0.68 0.581879
Target:  5'- -gCGCGUACGucCGCGUaAGCAGaUCGa -3'
miRNA:   3'- caGCGCGUGCuaGCGCA-UCGUC-AGCa -5'
24839 3' -55.7 NC_005284.1 + 33432 0.68 0.581879
Target:  5'- cGUCGuUGCACGccUGCGcGGUAGUCGa -3'
miRNA:   3'- -CAGC-GCGUGCuaGCGCaUCGUCAGCa -5'
24839 3' -55.7 NC_005284.1 + 35458 0.68 0.538763
Target:  5'- cGUCGCGCugGAucUCGCGcggugcgAGCAGcuuugcUCGc -3'
miRNA:   3'- -CAGCGCGugCU--AGCGCa------UCGUC------AGCa -5'
24839 3' -55.7 NC_005284.1 + 9915 0.69 0.496789
Target:  5'- cGUCGCuCGCGcUCGCGcAGCAGcggCGUa -3'
miRNA:   3'- -CAGCGcGUGCuAGCGCaUCGUCa--GCA- -5'
24839 3' -55.7 NC_005284.1 + 37192 0.69 0.496789
Target:  5'- cUCaCGCGgGAUCGCGUAGCugacgccgauGUCGg -3'
miRNA:   3'- cAGcGCGUgCUAGCGCAUCGu---------CAGCa -5'
24839 3' -55.7 NC_005284.1 + 21660 0.71 0.390142
Target:  5'- -cCGCGCACGAUgccgcCGCGUcGGCGGUgGc -3'
miRNA:   3'- caGCGCGUGCUA-----GCGCA-UCGUCAgCa -5'
24839 3' -55.7 NC_005284.1 + 11340 0.72 0.363753
Target:  5'- aUCGCGCAacugCGCGUcgaGGCGGUCGc -3'
miRNA:   3'- cAGCGCGUgcuaGCGCA---UCGUCAGCa -5'
24839 3' -55.7 NC_005284.1 + 47729 0.72 0.355235
Target:  5'- cGUCG-GUgaACGucggCGCGUAGCAGUCGa -3'
miRNA:   3'- -CAGCgCG--UGCua--GCGCAUCGUCAGCa -5'
24839 3' -55.7 NC_005284.1 + 31165 0.73 0.322588
Target:  5'- cGUCGCGC-CGAUCcagaCGUuauccGGCAGUCGg -3'
miRNA:   3'- -CAGCGCGuGCUAGc---GCA-----UCGUCAGCa -5'
24839 3' -55.7 NC_005284.1 + 24657 0.75 0.232187
Target:  5'- aGUCGCGCGCG---GCGU-GCAGUCGa -3'
miRNA:   3'- -CAGCGCGUGCuagCGCAuCGUCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.