Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24839 | 5' | -55.5 | NC_005284.1 | + | 5954 | 0.72 | 0.383634 |
Target: 5'- cGGACGccacGGCUGGC-GCCGAUccgaucGUCGCg -3' miRNA: 3'- -CCUGC----UUGACCGcCGGCUGau----CAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 10406 | 0.71 | 0.419875 |
Target: 5'- aGGCGucGCgGGCGGCCGAUgacgCGCa -3' miRNA: 3'- cCUGCu-UGaCCGCCGGCUGaucaGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 21328 | 0.71 | 0.419875 |
Target: 5'- cGGGCG-ACUGGCGG--GGCgcguGUCGCg -3' miRNA: 3'- -CCUGCuUGACCGCCggCUGau--CAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 48788 | 0.71 | 0.458112 |
Target: 5'- uGGCGAACUGcgaucaaucgaGCuGcCCGACUGGUUGCc -3' miRNA: 3'- cCUGCUUGAC-----------CGcC-GGCUGAUCAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 49384 | 0.69 | 0.550208 |
Target: 5'- -cGCGAGCUGGCGcGCCGcACgGGcaaGCa -3' miRNA: 3'- ccUGCUUGACCGC-CGGC-UGaUCag-CG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 12967 | 0.69 | 0.550208 |
Target: 5'- uGGGCGAGCacccagcggaagUGGCGGC-GACaacaaccgcGUCGCg -3' miRNA: 3'- -CCUGCUUG------------ACCGCCGgCUGau-------CAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 25516 | 0.7 | 0.518722 |
Target: 5'- cGGugGAAUcgGaGCGGCCGucgucgugcGCgcGUCGCu -3' miRNA: 3'- -CCugCUUGa-C-CGCCGGC---------UGauCAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 7019 | 0.7 | 0.46796 |
Target: 5'- cGGGCuGACUGGCGGCCGuuCcGGUUc- -3' miRNA: 3'- -CCUGcUUGACCGCCGGCu-GaUCAGcg -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 45643 | 0.7 | 0.46796 |
Target: 5'- gGGGCaGGCUGGCGGCuCGuc-GGUgCGCg -3' miRNA: 3'- -CCUGcUUGACCGCCG-GCugaUCA-GCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 39609 | 0.74 | 0.317643 |
Target: 5'- -cGCGAACUGGuCGGUCGGCacGGcCGCa -3' miRNA: 3'- ccUGCUUGACC-GCCGGCUGa-UCaGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 51877 | 0.71 | 0.419875 |
Target: 5'- uGGAgGAuCUGGuCGGUCGAagcacaccugaUGGUCGCa -3' miRNA: 3'- -CCUgCUuGACC-GCCGGCUg----------AUCAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 38833 | 0.69 | 0.550208 |
Target: 5'- cGGCGAACgugaGGCCGGC--GUCGCg -3' miRNA: 3'- cCUGCUUGaccgCCGGCUGauCAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 45273 | 0.69 | 0.582256 |
Target: 5'- cGACGAGCgcucgccgGGC-GCCGACccacgcuGUCGCc -3' miRNA: 3'- cCUGCUUGa-------CCGcCGGCUGau-----CAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 16531 | 0.67 | 0.701036 |
Target: 5'- cGGGCGcGCUGGCGGCaccagGACaa-UCGa -3' miRNA: 3'- -CCUGCuUGACCGCCGg----CUGaucAGCg -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 17520 | 0.66 | 0.711648 |
Target: 5'- gGGACaaAGCUGGCaaguCCGACgAGUCGUu -3' miRNA: 3'- -CCUGc-UUGACCGcc--GGCUGaUCAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 21128 | 0.66 | 0.722185 |
Target: 5'- gGGGCGAcuugguacgaccGCUGGCaGGCUGAaugcaCGCg -3' miRNA: 3'- -CCUGCU------------UGACCG-CCGGCUgaucaGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 944 | 0.66 | 0.726376 |
Target: 5'- --cUGAACUGGCGGgCGAUcaccccguucgagcuUGG-CGCa -3' miRNA: 3'- ccuGCUUGACCGCCgGCUG---------------AUCaGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 50522 | 0.66 | 0.732635 |
Target: 5'- gGGuGCGAgucgccgccGCUcuuGCGGCCGAacuGUCGCg -3' miRNA: 3'- -CC-UGCU---------UGAc--CGCCGGCUgauCAGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 20843 | 0.66 | 0.75323 |
Target: 5'- cGACGAGCgGGCGGC--GCUuc-CGCa -3' miRNA: 3'- cCUGCUUGaCCGCCGgcUGAucaGCG- -5' |
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24839 | 5' | -55.5 | NC_005284.1 | + | 39364 | 1.14 | 0.000487 |
Target: 5'- uGGACGAACUGGCGGCCGACUAGUCGCg -3' miRNA: 3'- -CCUGCUUGACCGCCGGCUGAUCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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