miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24840 3' -54.6 NC_005284.1 + 21062 0.66 0.759941
Target:  5'- uGAGGUGCuuGUCgCGCGgccaGAUccaaUCGGCAu -3'
miRNA:   3'- -CUCUAUGugCGG-GCGCa---CUA----AGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 12642 0.66 0.749541
Target:  5'- -cGAUACgACGCUgCGUGUGcgcaaagcccaGUUCGGCGa -3'
miRNA:   3'- cuCUAUG-UGCGG-GCGCAC-----------UAAGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 40169 0.66 0.749541
Target:  5'- cGAGGUaGCGCGCgaGCGU---UCGGCGc -3'
miRNA:   3'- -CUCUA-UGUGCGggCGCAcuaAGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 4121 0.66 0.716584
Target:  5'- -cGAUAauuccgcCACGUCCGCGaUGucUCGGCAc -3'
miRNA:   3'- cuCUAU-------GUGCGGGCGC-ACuaAGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 47707 0.67 0.706847
Target:  5'- aGGGcacGCGCGCUCGCGUGcgcagaaggccGUgcUCGGCGg -3'
miRNA:   3'- -CUCua-UGUGCGGGCGCAC-----------UA--AGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 12137 0.67 0.674004
Target:  5'- ----gGCGCGCUCG-GUGGUgCGGCAa -3'
miRNA:   3'- cucuaUGUGCGGGCgCACUAaGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 18492 0.67 0.651889
Target:  5'- cGAGA-ACGCGCUCgGCGUGAcgucgaUUcCGGCGu -3'
miRNA:   3'- -CUCUaUGUGCGGG-CGCACU------AA-GCCGU- -5'
24840 3' -54.6 NC_005284.1 + 9234 0.69 0.541774
Target:  5'- cGGGcgACGCGCCaCGCGg----CGGCAu -3'
miRNA:   3'- -CUCuaUGUGCGG-GCGCacuaaGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 20588 0.69 0.541774
Target:  5'- uGAGAUAaGCGCCguaCGgGUGAgcggCGGCAa -3'
miRNA:   3'- -CUCUAUgUGCGG---GCgCACUaa--GCCGU- -5'
24840 3' -54.6 NC_005284.1 + 37809 0.69 0.541774
Target:  5'- --uGUGCGCGUUCgGCGUGAUgCGGCGc -3'
miRNA:   3'- cucUAUGUGCGGG-CGCACUAaGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 2334 0.74 0.31497
Target:  5'- cGGGAgcuuCugGUCCGCGUGGggCGGUAu -3'
miRNA:   3'- -CUCUau--GugCGGGCGCACUaaGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 30379 0.79 0.14188
Target:  5'- -cGAUGCGCucgGCCCGCGUGugcuggUCGGCAu -3'
miRNA:   3'- cuCUAUGUG---CGGGCGCACua----AGCCGU- -5'
24840 3' -54.6 NC_005284.1 + 39119 1.08 0.001224
Target:  5'- cGAGAUACACGCCCGCGUGAUUCGGCAc -3'
miRNA:   3'- -CUCUAUGUGCGGGCGCACUAAGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.