miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24840 5' -55 NC_005284.1 + 32918 0.65 0.720945
Target:  5'- cGCUGCGucgacGUCUGauaggCGGCGGCACc- -3'
miRNA:   3'- -CGACGCc----UAGACgua--GUCGUCGUGca -5'
24840 5' -55 NC_005284.1 + 15090 0.66 0.710078
Target:  5'- aCUGCGccGUCUGCcUC-GCGGCGCGc -3'
miRNA:   3'- cGACGCc-UAGACGuAGuCGUCGUGCa -5'
24840 5' -55 NC_005284.1 + 33978 0.66 0.710078
Target:  5'- uGCUGCGGG-CUGCucgacaGGgGGUGCGg -3'
miRNA:   3'- -CGACGCCUaGACGuag---UCgUCGUGCa -5'
24840 5' -55 NC_005284.1 + 47562 0.66 0.699131
Target:  5'- aGCUGCucGAcugCUGCAU-GGCGGUGCGUg -3'
miRNA:   3'- -CGACGc-CUa--GACGUAgUCGUCGUGCA- -5'
24840 5' -55 NC_005284.1 + 4757 0.66 0.698033
Target:  5'- gGCgGCGGAaguuccuUgaGCAagCAGCGGUACGUc -3'
miRNA:   3'- -CGaCGCCU-------AgaCGUa-GUCGUCGUGCA- -5'
24840 5' -55 NC_005284.1 + 10098 0.67 0.653674
Target:  5'- cGCgGCGGGUCUGaagaCGGCgaccgaaAGCGCGg -3'
miRNA:   3'- -CGaCGCCUAGACgua-GUCG-------UCGUGCa -5'
24840 5' -55 NC_005284.1 + 3731 0.67 0.643623
Target:  5'- cGUUGcCGGuUCUGU---GGCAGCACGa -3'
miRNA:   3'- -CGAC-GCCuAGACGuagUCGUCGUGCa -5'
24840 5' -55 NC_005284.1 + 38089 0.67 0.621267
Target:  5'- --gGCGcGUCgGaCGUCAGCGGCACGc -3'
miRNA:   3'- cgaCGCcUAGaC-GUAGUCGUCGUGCa -5'
24840 5' -55 NC_005284.1 + 22560 0.67 0.610099
Target:  5'- uGCUGCGcAUCgaagaagaGCuAUCGGCGGCGCa- -3'
miRNA:   3'- -CGACGCcUAGa-------CG-UAGUCGUCGUGca -5'
24840 5' -55 NC_005284.1 + 49088 0.68 0.59895
Target:  5'- --cGCGGuaagcaacUCgGCAUCgAGCAGCGCGa -3'
miRNA:   3'- cgaCGCCu-------AGaCGUAG-UCGUCGUGCa -5'
24840 5' -55 NC_005284.1 + 32812 0.68 0.58783
Target:  5'- gGUUGCGGggCgGCGUCGGUuacggcaaggAGCACa- -3'
miRNA:   3'- -CGACGCCuaGaCGUAGUCG----------UCGUGca -5'
24840 5' -55 NC_005284.1 + 27208 0.68 0.576749
Target:  5'- aGCcGuUGGAcgUCUGCAUacguGCAGCGCGUc -3'
miRNA:   3'- -CGaC-GCCU--AGACGUAgu--CGUCGUGCA- -5'
24840 5' -55 NC_005284.1 + 48989 0.68 0.576749
Target:  5'- gGCUGgaCGGggCUGUucccggugaaGUCAGaCAGCACGg -3'
miRNA:   3'- -CGAC--GCCuaGACG----------UAGUC-GUCGUGCa -5'
24840 5' -55 NC_005284.1 + 15824 0.68 0.543821
Target:  5'- --cGCGGAUCaGCAUC-GC-GCACGa -3'
miRNA:   3'- cgaCGCCUAGaCGUAGuCGuCGUGCa -5'
24840 5' -55 NC_005284.1 + 41305 0.69 0.532977
Target:  5'- aGCUGguuuuagcguCGGAUgcgcaUGCAagcuUCGGCGGCGCGUa -3'
miRNA:   3'- -CGAC----------GCCUAg----ACGU----AGUCGUCGUGCA- -5'
24840 5' -55 NC_005284.1 + 11419 0.71 0.38285
Target:  5'- aGgUGaCGGAUCUGCG-CAGCAaGCGCa- -3'
miRNA:   3'- -CgAC-GCCUAGACGUaGUCGU-CGUGca -5'
24840 5' -55 NC_005284.1 + 36897 0.72 0.365032
Target:  5'- uGCUGCGcGAUCUGCGUC-GCuGCGa-- -3'
miRNA:   3'- -CGACGC-CUAGACGUAGuCGuCGUgca -5'
24840 5' -55 NC_005284.1 + 27388 0.73 0.315097
Target:  5'- cGCUGauaccCGGAUCUuCGUCAGgGGCGCGa -3'
miRNA:   3'- -CGAC-----GCCUAGAcGUAGUCgUCGUGCa -5'
24840 5' -55 NC_005284.1 + 8355 0.76 0.185738
Target:  5'- -gUGCGGAUCUGCAUgcggcgaugaucgCGGCGGCGgCGUu -3'
miRNA:   3'- cgACGCCUAGACGUA-------------GUCGUCGU-GCA- -5'
24840 5' -55 NC_005284.1 + 39155 1.09 0.00095
Target:  5'- uGCUGCGGAUCUGCAUCAGCAGCACGUc -3'
miRNA:   3'- -CGACGCCUAGACGUAGUCGUCGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.