miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24841 3' -63.3 NC_005284.1 + 258 0.66 0.333319
Target:  5'- aGAGGCCGcUGUCGCGgCGCaaGAUG-Cg -3'
miRNA:   3'- aCUCCGGCcGCAGCGC-GCGg-CUGCaG- -5'
24841 3' -63.3 NC_005284.1 + 1279 0.7 0.167769
Target:  5'- aGGGGCCGuGCuUCGacaaGCGCCGGCa-- -3'
miRNA:   3'- aCUCCGGC-CGcAGCg---CGCGGCUGcag -5'
24841 3' -63.3 NC_005284.1 + 6788 0.66 0.348866
Target:  5'- aUGcGGCCGGCGUuugaUGCGuCGaUCGGCGa- -3'
miRNA:   3'- -ACuCCGGCCGCA----GCGC-GC-GGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 6932 0.75 0.071591
Target:  5'- aGGGGUaucuCGGCGUCGCaccggagaagGCGCCGGCGcCg -3'
miRNA:   3'- aCUCCG----GCCGCAGCG----------CGCGGCUGCaG- -5'
24841 3' -63.3 NC_005284.1 + 8700 0.67 0.282954
Target:  5'- gUGcAGGUcaCGGUG-CGCGCGCuCGACG-Cg -3'
miRNA:   3'- -AC-UCCG--GCCGCaGCGCGCG-GCUGCaG- -5'
24841 3' -63.3 NC_005284.1 + 8733 0.66 0.348866
Target:  5'- aGAGGCCGGag-CGCuuGCCGuCGa- -3'
miRNA:   3'- aCUCCGGCCgcaGCGcgCGGCuGCag -5'
24841 3' -63.3 NC_005284.1 + 9766 0.68 0.256358
Target:  5'- cGAGGCgaCGGCGcaagcUcacgucgcaacggCGCGCGCCaACGUCg -3'
miRNA:   3'- aCUCCG--GCCGC-----A-------------GCGCGCGGcUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 10381 0.67 0.289764
Target:  5'- cGAGGCa-GUaaUCGCGCGUCGACGa- -3'
miRNA:   3'- aCUCCGgcCGc-AGCGCGCGGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 11859 0.66 0.333319
Target:  5'- uUGcAGGCCGaC-UgGCGCGUCGGCGUg -3'
miRNA:   3'- -AC-UCCGGCcGcAgCGCGCGGCUGCAg -5'
24841 3' -63.3 NC_005284.1 + 12051 0.67 0.303768
Target:  5'- cGcGGUuuuCGGCG-CGUGCGgCGAUGUCu -3'
miRNA:   3'- aCuCCG---GCCGCaGCGCGCgGCUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 13193 0.66 0.318285
Target:  5'- --cGGCgCGGCcUCGCGCGCguACGUUg -3'
miRNA:   3'- acuCCG-GCCGcAGCGCGCGgcUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 15494 0.67 0.289764
Target:  5'- cGA-GCgCGGCGUCGCGUuacCCGACuUCg -3'
miRNA:   3'- aCUcCG-GCCGCAGCGCGc--GGCUGcAG- -5'
24841 3' -63.3 NC_005284.1 + 15618 0.68 0.263286
Target:  5'- uUGcAGGUCGGCGaCGUGCuGCUGAUG-Ca -3'
miRNA:   3'- -AC-UCCGGCCGCaGCGCG-CGGCUGCaG- -5'
24841 3' -63.3 NC_005284.1 + 15944 0.67 0.269716
Target:  5'- cUGAcGUCGGCG-CGCGaCGCCGGCc-- -3'
miRNA:   3'- -ACUcCGGCCGCaGCGC-GCGGCUGcag -5'
24841 3' -63.3 NC_005284.1 + 16228 0.67 0.282954
Target:  5'- -cAGGCCGGCcUCGCGgGgaCGGCGa- -3'
miRNA:   3'- acUCCGGCCGcAGCGCgCg-GCUGCag -5'
24841 3' -63.3 NC_005284.1 + 16684 0.9 0.005809
Target:  5'- gUGAGGCCGGCGUCgGCGUGCCgcuGACGUCc -3'
miRNA:   3'- -ACUCCGGCCGCAG-CGCGCGG---CUGCAG- -5'
24841 3' -63.3 NC_005284.1 + 17494 0.68 0.244743
Target:  5'- -cGGGUCGGUgGUCGCGUcgGCCGAuaugcCGUCc -3'
miRNA:   3'- acUCCGGCCG-CAGCGCG--CGGCU-----GCAG- -5'
24841 3' -63.3 NC_005284.1 + 19403 0.68 0.244743
Target:  5'- cGAGGgCGGUGcaggcgugaUCgGCGCGCCGuuCGUUg -3'
miRNA:   3'- aCUCCgGCCGC---------AG-CGCGCGGCu-GCAG- -5'
24841 3' -63.3 NC_005284.1 + 20005 0.66 0.325738
Target:  5'- cGAGGUCGGCGaaGC-UGCUGAUGg- -3'
miRNA:   3'- aCUCCGGCCGCagCGcGCGGCUGCag -5'
24841 3' -63.3 NC_005284.1 + 23346 0.7 0.185877
Target:  5'- gGGGGcCCGGCGcgcCGCaGCGgCGcACGUCg -3'
miRNA:   3'- aCUCC-GGCCGCa--GCG-CGCgGC-UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.