miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24841 5' -51.3 NC_005284.1 + 3743 0.66 0.909675
Target:  5'- cGGAcAGCCGGGGAau-GCAaugaaccuguucCCGGUAa -3'
miRNA:   3'- -CCUuUCGGCCCUUaguCGU------------GGCUAUc -5'
24841 5' -51.3 NC_005284.1 + 1853 0.66 0.909675
Target:  5'- aGGAAAGCCaucGGcuUCGGCGCCc---- -3'
miRNA:   3'- -CCUUUCGGc--CCuuAGUCGUGGcuauc -5'
24841 5' -51.3 NC_005284.1 + 14387 0.66 0.888394
Target:  5'- cGAcuGCaCGGaAAUCGGCGCCGAc-- -3'
miRNA:   3'- cCUuuCG-GCCcUUAGUCGUGGCUauc -5'
24841 5' -51.3 NC_005284.1 + 17486 0.67 0.880745
Target:  5'- uGGGgcGCCGGG--UCGGUggucgcgucgGCCGAUAu -3'
miRNA:   3'- -CCUuuCGGCCCuuAGUCG----------UGGCUAUc -5'
24841 5' -51.3 NC_005284.1 + 48913 0.67 0.852763
Target:  5'- cGGAAGCCGauugcguugCGGCGCCGAUGu -3'
miRNA:   3'- cCUUUCGGCccuua----GUCGUGGCUAUc -5'
24841 5' -51.3 NC_005284.1 + 25792 0.68 0.838602
Target:  5'- -cGAGGUCGuGggUCAGCGCCaGUGGc -3'
miRNA:   3'- ccUUUCGGCcCuuAGUCGUGGcUAUC- -5'
24841 5' -51.3 NC_005284.1 + 12561 0.68 0.800734
Target:  5'- gGGAAAGCCaGGGucguUCAGCcuacuGCgGAUAu -3'
miRNA:   3'- -CCUUUCGG-CCCuu--AGUCG-----UGgCUAUc -5'
24841 5' -51.3 NC_005284.1 + 31498 0.69 0.780641
Target:  5'- ----cGCCGGGAuacacgccgauAUCGGCACCGc--- -3'
miRNA:   3'- ccuuuCGGCCCU-----------UAGUCGUGGCuauc -5'
24841 5' -51.3 NC_005284.1 + 35425 0.7 0.716864
Target:  5'- gGGGAAGCuCGGGAugcGUCAGCcaGCCu---- -3'
miRNA:   3'- -CCUUUCG-GCCCU---UAGUCG--UGGcuauc -5'
24841 5' -51.3 NC_005284.1 + 54615 0.7 0.705854
Target:  5'- cGAAGGCgCGGGGu--GGCACCGAc-- -3'
miRNA:   3'- cCUUUCG-GCCCUuagUCGUGGCUauc -5'
24841 5' -51.3 NC_005284.1 + 3016 0.7 0.705854
Target:  5'- uGGAAGCCGGGAugaAGUACCa---- -3'
miRNA:   3'- cCUUUCGGCCCUuagUCGUGGcuauc -5'
24841 5' -51.3 NC_005284.1 + 48865 0.72 0.571122
Target:  5'- cGAAAGCgGcGGAgaaGUCGGCGCCG-UGGa -3'
miRNA:   3'- cCUUUCGgC-CCU---UAGUCGUGGCuAUC- -5'
24841 5' -51.3 NC_005284.1 + 32584 0.74 0.508688
Target:  5'- cGGAAAGCgCGGGAugaugugGUCAGCgagucgacgcuugccGCCGAUccAGg -3'
miRNA:   3'- -CCUUUCG-GCCCU-------UAGUCG---------------UGGCUA--UC- -5'
24841 5' -51.3 NC_005284.1 + 38876 1.11 0.001879
Target:  5'- cGGAAAGCCGGGAAUCAGCACCGAUAGc -3'
miRNA:   3'- -CCUUUCGGCCCUUAGUCGUGGCUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.