miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 27126 0.66 0.621126
Target:  5'- uGCGCGU---GCCCGCCG-CGACgcaucugCGAUg -3'
miRNA:   3'- -CGCGUAugcUGGGCGGCaGCUG-------GCUG- -5'
24842 3' -57.7 NC_005284.1 + 8978 0.66 0.643578
Target:  5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3'
miRNA:   3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16296 0.66 0.622195
Target:  5'- uGCGCAggGCGAgCCgguGCCGcUCGucAUCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUgGG---CGGC-AGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 23299 0.66 0.622195
Target:  5'- gGCGUGUAU--CCCGgCGUCG-UCGACg -3'
miRNA:   3'- -CGCGUAUGcuGGGCgGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 8887 0.66 0.622195
Target:  5'- uGCGCAUcgcgcGCGACacaCGgcaaCCGcUCGACgCGACa -3'
miRNA:   3'- -CGCGUA-----UGCUGg--GC----GGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 30382 0.67 0.552224
Target:  5'- uGCGCu--CGGCCCGCgugugcuggucggcaUGUCGAUCGuCc -3'
miRNA:   3'- -CGCGuauGCUGGGCG---------------GCAGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 6329 0.67 0.548046
Target:  5'- uGCGCAUuCGAuUUCGCCG-CGAugUCGACa -3'
miRNA:   3'- -CGCGUAuGCU-GGGCGGCaGCU--GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 54650 0.67 0.527314
Target:  5'- cUGCAaGCGAUCUGCCGU-GACUGuCa -3'
miRNA:   3'- cGCGUaUGCUGGGCGGCAgCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 7064 0.67 0.527314
Target:  5'- cGCGCcgACGuucACCgaCGCCGaUCGgcuuGCCGACu -3'
miRNA:   3'- -CGCGuaUGC---UGG--GCGGC-AGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6998 0.67 0.527314
Target:  5'- cGCGCucgacaugGCG-CUCGCCGggcUGACUGGCg -3'
miRNA:   3'- -CGCGua------UGCuGGGCGGCa--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 14182 0.67 0.527314
Target:  5'- gGCGagaGCGGCCCcccaaaggggcgGCCGUCG-CUGACc -3'
miRNA:   3'- -CGCguaUGCUGGG------------CGGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7716 0.67 0.558509
Target:  5'- uGCGCcgaagcuCGugCCGCCGcCGG-CGGCg -3'
miRNA:   3'- -CGCGuau----GCugGGCGGCaGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 31440 0.67 0.558509
Target:  5'- uGCGCcgcUGCGGCgCGCCGggcccccaaUUGACCGcCg -3'
miRNA:   3'- -CGCGu--AUGCUGgGCGGC---------AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 2893 0.67 0.579595
Target:  5'- -gGguUGCGACCaucaggugUGCUcUCGACCGACc -3'
miRNA:   3'- cgCguAUGCUGG--------GCGGcAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43288 0.67 0.569027
Target:  5'- uCGCGgACGGCCUGCUGU--AUCGACu -3'
miRNA:   3'- cGCGUaUGCUGGGCGGCAgcUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 53662 0.67 0.577478
Target:  5'- uGUGCAgGCGGCaacucgaucaaGUCGUCGACgGGCa -3'
miRNA:   3'- -CGCGUaUGCUGgg---------CGGCAGCUGgCUG- -5'
24842 3' -57.7 NC_005284.1 + 28686 0.67 0.558509
Target:  5'- gGUGUggACGACUgGCauaucaccgauUGUCGGCCGGCc -3'
miRNA:   3'- -CGCGuaUGCUGGgCG-----------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37204 0.67 0.579595
Target:  5'- cGCGUAgcUGACgCCGaugucggUGUUGACCGACa -3'
miRNA:   3'- -CGCGUauGCUG-GGCg------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45009 0.67 0.579595
Target:  5'- cGCGCGccguUGCGACgugagcuugCGCCGUCGcCuCGACc -3'
miRNA:   3'- -CGCGU----AUGCUGg--------GCGGCAGCuG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 28423 0.67 0.579595
Target:  5'- cGCGCGUGuuguagacCGGCgCGCCGgcgUUGACCGuGCc -3'
miRNA:   3'- -CGCGUAU--------GCUGgGCGGC---AGCUGGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.