miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 39023 0.67 0.537645
Target:  5'- aGCGCAgcaccguCGugCaGCUGUCGGCCcACa -3'
miRNA:   3'- -CGCGUau-----GCugGgCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 42983 0.67 0.537645
Target:  5'- cGCGC--GCGACCUGCUccgccUCGGCCGu- -3'
miRNA:   3'- -CGCGuaUGCUGGGCGGc----AGCUGGCug -5'
24842 3' -57.7 NC_005284.1 + 42105 0.67 0.548046
Target:  5'- cCGUccGCGGCCCgcuggguguaGCCGUCG-CCGAa -3'
miRNA:   3'- cGCGuaUGCUGGG----------CGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 46876 0.67 0.567973
Target:  5'- aGCGCuu-CGAUCCagaacauGCgGUCG-CCGACg -3'
miRNA:   3'- -CGCGuauGCUGGG-------CGgCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 23448 0.67 0.569027
Target:  5'- aGCGCGUGu--UCUGCgCGUCGcucGCCGACg -3'
miRNA:   3'- -CGCGUAUgcuGGGCG-GCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 50857 0.67 0.579595
Target:  5'- -aGCGUGCGAaucCCCGUuuuuuCGUUGuaauCCGACg -3'
miRNA:   3'- cgCGUAUGCU---GGGCG-----GCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 32141 0.67 0.579595
Target:  5'- aGCGUGUGCGGCCgaUCGUaaCGAUCGAUg -3'
miRNA:   3'- -CGCGUAUGCUGGgcGGCA--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38757 0.67 0.579595
Target:  5'- gGCGCAaUGCGGauCUCGUCG-CGcCCGACc -3'
miRNA:   3'- -CGCGU-AUGCU--GGGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 44085 0.67 0.536609
Target:  5'- uGCGCGccuuucUGCGaagcgagGCCCGCCGugUCGAUCG-Cg -3'
miRNA:   3'- -CGCGU------AUGC-------UGGGCGGC--AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 14978 0.67 0.527314
Target:  5'- uGCgGCAcGCGGCCCGguugaagcUCGaauaCGACCGACg -3'
miRNA:   3'- -CG-CGUaUGCUGGGC--------GGCa---GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 3701 0.67 0.527314
Target:  5'- cCGCAUuuCGAUuuggCCGUCGUCGAgcUCGACa -3'
miRNA:   3'- cGCGUAu-GCUG----GGCGGCAGCU--GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6998 0.67 0.527314
Target:  5'- cGCGCucgacaugGCG-CUCGCCGggcUGACUGGCg -3'
miRNA:   3'- -CGCGua------UGCuGGGCGGCa--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 14182 0.67 0.527314
Target:  5'- gGCGagaGCGGCCCcccaaaggggcgGCCGUCG-CUGACc -3'
miRNA:   3'- -CGCguaUGCUGGG------------CGGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 5889 0.67 0.55746
Target:  5'- gGCGCA-GCGACaccuucgCCGCCGggCGuguccacggcGCCGACu -3'
miRNA:   3'- -CGCGUaUGCUG-------GGCGGCa-GC----------UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6275 0.67 0.558509
Target:  5'- cGCGCGUAUucccacGCCCGCCcuUCGACUcGCu -3'
miRNA:   3'- -CGCGUAUGc-----UGGGCGGc-AGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 50520 0.67 0.558509
Target:  5'- cCGgGUGCGAgUCGCCGccgcucuugCGGCCGAa -3'
miRNA:   3'- cGCgUAUGCUgGGCGGCa--------GCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 5425 0.67 0.579595
Target:  5'- cGCGCucgGCGAa--GCUG-CGACCGAUa -3'
miRNA:   3'- -CGCGua-UGCUgggCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 17162 0.67 0.527314
Target:  5'- cGUGCuguuucuCGugCUGCUGUCGAUCGuCa -3'
miRNA:   3'- -CGCGuau----GCugGGCGGCAGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 21404 0.67 0.527314
Target:  5'- gGUGaugGCGAgCCGUCGgcagcgcCGGCCGACg -3'
miRNA:   3'- -CGCguaUGCUgGGCGGCa------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 9575 0.67 0.569027
Target:  5'- cGCGCu--CGAUCUcguGCCGuUCGACaCGGCc -3'
miRNA:   3'- -CGCGuauGCUGGG---CGGC-AGCUG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.