miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 47626 0.68 0.496791
Target:  5'- cGCGCugaagcuUGCGAa--GCUGUCGcCCGACg -3'
miRNA:   3'- -CGCGu------AUGCUgggCGGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 15109 0.68 0.506881
Target:  5'- cGCGCGagugcUGCgGGCUCGUCGUgaaGACCGAg -3'
miRNA:   3'- -CGCGU-----AUG-CUGGGCGGCAg--CUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 48022 0.68 0.496791
Target:  5'- cGCGCG--UGACCgUGUCGUCGACCc-- -3'
miRNA:   3'- -CGCGUauGCUGG-GCGGCAGCUGGcug -5'
24842 3' -57.7 NC_005284.1 + 10486 0.68 0.517056
Target:  5'- aCGUuugGCGAUgCGCCGUCGguggucucggauGCCGAUc -3'
miRNA:   3'- cGCGua-UGCUGgGCGGCAGC------------UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 50125 0.68 0.517056
Target:  5'- cGCGCAcGCGGCguUCGCCaUgGACCGGa -3'
miRNA:   3'- -CGCGUaUGCUG--GGCGGcAgCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 47899 0.68 0.496791
Target:  5'- cGCGCuUGCGcgagcaguuCCCGCCGaCGGCCa-- -3'
miRNA:   3'- -CGCGuAUGCu--------GGGCGGCaGCUGGcug -5'
24842 3' -57.7 NC_005284.1 + 38089 0.68 0.517056
Target:  5'- gGCGCGUcggacgucaGCGGCaCGCCGaCG-CCGGCc -3'
miRNA:   3'- -CGCGUA---------UGCUGgGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 31214 0.68 0.47689
Target:  5'- cCGCu--CGACCCGCUc-CGGCUGGCa -3'
miRNA:   3'- cGCGuauGCUGGGCGGcaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 32974 0.68 0.506881
Target:  5'- aGCGC---CGGgCaCGCCGUCGccACCGGCu -3'
miRNA:   3'- -CGCGuauGCUgG-GCGGCAGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43864 0.68 0.496791
Target:  5'- aGCGCGccguugAUGAUCCGCgCGUCGugUG-Cg -3'
miRNA:   3'- -CGCGUa-----UGCUGGGCG-GCAGCugGCuG- -5'
24842 3' -57.7 NC_005284.1 + 41601 0.68 0.486792
Target:  5'- cGCGCGcgaGGCCgCGCCGagugCGAgcuCCGACa -3'
miRNA:   3'- -CGCGUaugCUGG-GCGGCa---GCU---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7548 0.68 0.486792
Target:  5'- aGgGCAaaacauucUGCGugCCGCgCGUgCGACgGGCg -3'
miRNA:   3'- -CgCGU--------AUGCugGGCG-GCA-GCUGgCUG- -5'
24842 3' -57.7 NC_005284.1 + 30266 0.68 0.47689
Target:  5'- gGCGCGUuCG-UUCGCUGUCGAgUGGCu -3'
miRNA:   3'- -CGCGUAuGCuGGGCGGCAGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 29144 0.68 0.47689
Target:  5'- uGCGCGcAUGACCCGCUgcauauguaGUUuuCCGGCg -3'
miRNA:   3'- -CGCGUaUGCUGGGCGG---------CAGcuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 10876 0.68 0.467089
Target:  5'- -gGUAUgACGGCCCGCCagaaGGCCGAg -3'
miRNA:   3'- cgCGUA-UGCUGGGCGGcag-CUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 36900 0.68 0.496791
Target:  5'- uGCGCGaucugcgucgcUGCGAUCUuCCGUUGAUCGAg -3'
miRNA:   3'- -CGCGU-----------AUGCUGGGcGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 27681 0.68 0.496791
Target:  5'- cGCGCAauUGAUCCGUCGUUGcUCGAg -3'
miRNA:   3'- -CGCGUauGCUGGGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 45853 0.68 0.505868
Target:  5'- cGCGUuguuUGCGAUCCGCUGauacagcUCGGCUGuCg -3'
miRNA:   3'- -CGCGu---AUGCUGGGCGGC-------AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 53481 0.69 0.419731
Target:  5'- uUGCAUGCGAgaagcCCCGCCGguUCG-CCGcGCg -3'
miRNA:   3'- cGCGUAUGCU-----GGGCGGC--AGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 54696 0.69 0.426187
Target:  5'- aGCGguUGCGgugacgugguggugGCCCGuCCGUCGuugcccgcCCGGCg -3'
miRNA:   3'- -CGCguAUGC--------------UGGGC-GGCAGCu-------GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.