Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24842 | 3' | -57.7 | NC_005284.1 | + | 24531 | 0.69 | 0.438331 |
Target: 5'- aGCGaacgaACGcGCCCGCuCGaCGGCCGACu -3' miRNA: 3'- -CGCgua--UGC-UGGGCG-GCaGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 38219 | 0.69 | 0.419731 |
Target: 5'- cCGCGUucuggauCGGCgUGCCGUCGAgauagaCCGACu -3' miRNA: 3'- cGCGUAu------GCUGgGCGGCAGCU------GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 33456 | 0.69 | 0.447805 |
Target: 5'- cGCGCGacacGCGcCCCGCCaGUCGcCCG-Ca -3' miRNA: 3'- -CGCGUa---UGCuGGGCGG-CAGCuGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 54696 | 0.69 | 0.426187 |
Target: 5'- aGCGguUGCGgugacgugguggugGCCCGuCCGUCGuugcccgcCCGGCg -3' miRNA: 3'- -CGCguAUGC--------------UGGGC-GGCAGCu-------GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 53481 | 0.69 | 0.419731 |
Target: 5'- uUGCAUGCGAgaagcCCCGCCGguUCG-CCGcGCg -3' miRNA: 3'- cGCGUAUGCU-----GGGCGGC--AGCuGGC-UG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 336 | 0.69 | 0.419731 |
Target: 5'- uCGCA-ACGGCCCuGUCGUCGACagcucgcaaGGCa -3' miRNA: 3'- cGCGUaUGCUGGG-CGGCAGCUGg--------CUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 19379 | 0.7 | 0.3754 |
Target: 5'- uGCGaa-GCGAUUCGCCGU-GAUCGACg -3' miRNA: 3'- -CGCguaUGCUGGGCGGCAgCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 15954 | 0.7 | 0.366921 |
Target: 5'- cGCGCGacgcCGGCCCacguucGCCGUguucaaCGGCCGGCg -3' miRNA: 3'- -CGCGUau--GCUGGG------CGGCA------GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 11694 | 0.7 | 0.366921 |
Target: 5'- cGCGUgaGCGACgaguuUCGCCGUCGACgGgACg -3' miRNA: 3'- -CGCGuaUGCUG-----GGCGGCAGCUGgC-UG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 47135 | 0.7 | 0.39275 |
Target: 5'- aCGCucgucACGgacccgaagcACCCGCUGUaCGACCGGCg -3' miRNA: 3'- cGCGua---UGC----------UGGGCGGCA-GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 36204 | 0.7 | 0.399834 |
Target: 5'- cCGUAcACGauGCCCGCCGcagucagcgacaCGACCGACg -3' miRNA: 3'- cGCGUaUGC--UGGGCGGCa-----------GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 46440 | 0.7 | 0.401618 |
Target: 5'- cCGCAUGCaGAUCCGCaCGaUCGucugcaACCGGCg -3' miRNA: 3'- cGCGUAUG-CUGGGCG-GC-AGC------UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 45436 | 0.7 | 0.3754 |
Target: 5'- cGCGCucGCG-CCCGUCGcUUGAuCCGACu -3' miRNA: 3'- -CGCGuaUGCuGGGCGGC-AGCU-GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 8539 | 0.7 | 0.370297 |
Target: 5'- cGCGCGUagauGCGuccauuccgcaucccACCCGCgGUCGGCCa-- -3' miRNA: 3'- -CGCGUA----UGC---------------UGGGCGgCAGCUGGcug -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 44149 | 0.7 | 0.366921 |
Target: 5'- cGCGCA-GCGcuuCgCCGCCGcUCGucGCCGACa -3' miRNA: 3'- -CGCGUaUGCu--G-GGCGGC-AGC--UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 36162 | 0.71 | 0.326536 |
Target: 5'- uGCGCGU-CGACCUGuuGUCGGauGAUc -3' miRNA: 3'- -CGCGUAuGCUGGGCggCAGCUggCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6783 | 0.71 | 0.334343 |
Target: 5'- cGUuCAUGCGGCCgGCguuugaugCGUCGAUCGGCg -3' miRNA: 3'- -CGcGUAUGCUGGgCG--------GCAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 8248 | 0.71 | 0.318866 |
Target: 5'- cGCGC-UGCGGCUCGgcaagaCGUUGGCCGAg -3' miRNA: 3'- -CGCGuAUGCUGGGCg-----GCAGCUGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 53654 | 0.71 | 0.318866 |
Target: 5'- -aGCAcgaugGCGACgCGCCGUCGcCCGGg -3' miRNA: 3'- cgCGUa----UGCUGgGCGGCAGCuGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 8600 | 0.72 | 0.289544 |
Target: 5'- cCGCAUGCGcggucuCUCGUCGaCGGCCGGCu -3' miRNA: 3'- cGCGUAUGCu-----GGGCGGCaGCUGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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