Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24842 | 3' | -57.7 | NC_005284.1 | + | 43288 | 0.67 | 0.569027 |
Target: 5'- uCGCGgACGGCCUGCUGU--AUCGACu -3' miRNA: 3'- cGCGUaUGCUGGGCGGCAgcUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 31440 | 0.67 | 0.558509 |
Target: 5'- uGCGCcgcUGCGGCgCGCCGggcccccaaUUGACCGcCg -3' miRNA: 3'- -CGCGu--AUGCUGgGCGGC---------AGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 28686 | 0.67 | 0.558509 |
Target: 5'- gGUGUggACGACUgGCauaucaccgauUGUCGGCCGGCc -3' miRNA: 3'- -CGCGuaUGCUGGgCG-----------GCAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 7716 | 0.67 | 0.558509 |
Target: 5'- uGCGCcgaagcuCGugCCGCCGcCGG-CGGCg -3' miRNA: 3'- -CGCGuau----GCugGGCGGCaGCUgGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 30382 | 0.67 | 0.552224 |
Target: 5'- uGCGCu--CGGCCCGCgugugcuggucggcaUGUCGAUCGuCc -3' miRNA: 3'- -CGCGuauGCUGGGCG---------------GCAGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 54650 | 0.67 | 0.527314 |
Target: 5'- cUGCAaGCGAUCUGCCGU-GACUGuCa -3' miRNA: 3'- cGCGUaUGCUGGGCGGCAgCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 7064 | 0.67 | 0.527314 |
Target: 5'- cGCGCcgACGuucACCgaCGCCGaUCGgcuuGCCGACu -3' miRNA: 3'- -CGCGuaUGC---UGG--GCGGC-AGC----UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6998 | 0.67 | 0.527314 |
Target: 5'- cGCGCucgacaugGCG-CUCGCCGggcUGACUGGCg -3' miRNA: 3'- -CGCGua------UGCuGGGCGGCa--GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 2893 | 0.67 | 0.579595 |
Target: 5'- -gGguUGCGACCaucaggugUGCUcUCGACCGACc -3' miRNA: 3'- cgCguAUGCUGG--------GCGGcAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 37204 | 0.67 | 0.579595 |
Target: 5'- cGCGUAgcUGACgCCGaugucggUGUUGACCGACa -3' miRNA: 3'- -CGCGUauGCUG-GGCg------GCAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6329 | 0.67 | 0.548046 |
Target: 5'- uGCGCAUuCGAuUUCGCCG-CGAugUCGACa -3' miRNA: 3'- -CGCGUAuGCU-GGGCGGCaGCU--GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 5425 | 0.67 | 0.579595 |
Target: 5'- cGCGCucgGCGAa--GCUG-CGACCGAUa -3' miRNA: 3'- -CGCGua-UGCUgggCGGCaGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 28423 | 0.67 | 0.579595 |
Target: 5'- cGCGCGUGuuguagacCGGCgCGCCGgcgUUGACCGuGCc -3' miRNA: 3'- -CGCGUAU--------GCUGgGCGGC---AGCUGGC-UG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 45009 | 0.67 | 0.579595 |
Target: 5'- cGCGCGccguUGCGACgugagcuugCGCCGUCGcCuCGACc -3' miRNA: 3'- -CGCGU----AUGCUGg--------GCGGCAGCuG-GCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 14182 | 0.67 | 0.527314 |
Target: 5'- gGCGagaGCGGCCCcccaaaggggcgGCCGUCG-CUGACc -3' miRNA: 3'- -CGCguaUGCUGGG------------CGGCAGCuGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 43831 | 0.66 | 0.643578 |
Target: 5'- uUGUAUGCG-UCCGCuCGUCcggcgacgaGGCCGGCc -3' miRNA: 3'- cGCGUAUGCuGGGCG-GCAG---------CUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 8978 | 0.66 | 0.643578 |
Target: 5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3' miRNA: 3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 38970 | 0.66 | 0.643578 |
Target: 5'- uGCGCgAUGCuGAUCCGCgGgcugCGcGCUGGCg -3' miRNA: 3'- -CGCG-UAUG-CUGGGCGgCa---GC-UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 10081 | 0.66 | 0.639302 |
Target: 5'- cGCGCGgcgaccGCGACCgCGgCGggucugaagacggCGACCGAa -3' miRNA: 3'- -CGCGUa-----UGCUGG-GCgGCa------------GCUGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 9586 | 0.66 | 0.632887 |
Target: 5'- aGCGCAggGCGAUCgCGCUGcCGcGgCGGCg -3' miRNA: 3'- -CGCGUa-UGCUGG-GCGGCaGC-UgGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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