Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24842 | 3' | -57.7 | NC_005284.1 | + | 14978 | 0.67 | 0.527314 |
Target: 5'- uGCgGCAcGCGGCCCGguugaagcUCGaauaCGACCGACg -3' miRNA: 3'- -CG-CGUaUGCUGGGC--------GGCa---GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 3701 | 0.67 | 0.527314 |
Target: 5'- cCGCAUuuCGAUuuggCCGUCGUCGAgcUCGACa -3' miRNA: 3'- cGCGUAu-GCUG----GGCGGCAGCU--GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6998 | 0.67 | 0.527314 |
Target: 5'- cGCGCucgacaugGCG-CUCGCCGggcUGACUGGCg -3' miRNA: 3'- -CGCGua------UGCuGGGCGGCa--GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 7064 | 0.67 | 0.527314 |
Target: 5'- cGCGCcgACGuucACCgaCGCCGaUCGgcuuGCCGACu -3' miRNA: 3'- -CGCGuaUGC---UGG--GCGGC-AGC----UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 17162 | 0.67 | 0.527314 |
Target: 5'- cGUGCuguuucuCGugCUGCUGUCGAUCGuCa -3' miRNA: 3'- -CGCGuau----GCugGGCGGCAGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 21404 | 0.67 | 0.527314 |
Target: 5'- gGUGaugGCGAgCCGUCGgcagcgcCGGCCGACg -3' miRNA: 3'- -CGCguaUGCUgGGCGGCa------GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 54650 | 0.67 | 0.527314 |
Target: 5'- cUGCAaGCGAUCUGCCGU-GACUGuCa -3' miRNA: 3'- cGCGUaUGCUGGGCGGCAgCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 14182 | 0.67 | 0.527314 |
Target: 5'- gGCGagaGCGGCCCcccaaaggggcgGCCGUCG-CUGACc -3' miRNA: 3'- -CGCguaUGCUGGG------------CGGCAGCuGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 44085 | 0.67 | 0.536609 |
Target: 5'- uGCGCGccuuucUGCGaagcgagGCCCGCCGugUCGAUCG-Cg -3' miRNA: 3'- -CGCGU------AUGC-------UGGGCGGC--AGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 7499 | 0.67 | 0.536609 |
Target: 5'- cGCGCGUugaucacGCGGCgaCgGCCGUCGAUC-ACg -3' miRNA: 3'- -CGCGUA-------UGCUG--GgCGGCAGCUGGcUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 39023 | 0.67 | 0.537645 |
Target: 5'- aGCGCAgcaccguCGugCaGCUGUCGGCCcACa -3' miRNA: 3'- -CGCGUau-----GCugGgCGGCAGCUGGcUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 42983 | 0.67 | 0.537645 |
Target: 5'- cGCGC--GCGACCUGCUccgccUCGGCCGu- -3' miRNA: 3'- -CGCGuaUGCUGGGCGGc----AGCUGGCug -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6329 | 0.67 | 0.548046 |
Target: 5'- uGCGCAUuCGAuUUCGCCG-CGAugUCGACa -3' miRNA: 3'- -CGCGUAuGCU-GGGCGGCaGCU--GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 42105 | 0.67 | 0.548046 |
Target: 5'- cCGUccGCGGCCCgcuggguguaGCCGUCG-CCGAa -3' miRNA: 3'- cGCGuaUGCUGGG----------CGGCAGCuGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 30382 | 0.67 | 0.552224 |
Target: 5'- uGCGCu--CGGCCCGCgugugcuggucggcaUGUCGAUCGuCc -3' miRNA: 3'- -CGCGuauGCUGGGCG---------------GCAGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 5889 | 0.67 | 0.55746 |
Target: 5'- gGCGCA-GCGACaccuucgCCGCCGggCGuguccacggcGCCGACu -3' miRNA: 3'- -CGCGUaUGCUG-------GGCGGCa-GC----------UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6275 | 0.67 | 0.558509 |
Target: 5'- cGCGCGUAUucccacGCCCGCCcuUCGACUcGCu -3' miRNA: 3'- -CGCGUAUGc-----UGGGCGGc-AGCUGGcUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 28686 | 0.67 | 0.558509 |
Target: 5'- gGUGUggACGACUgGCauaucaccgauUGUCGGCCGGCc -3' miRNA: 3'- -CGCGuaUGCUGGgCG-----------GCAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 31440 | 0.67 | 0.558509 |
Target: 5'- uGCGCcgcUGCGGCgCGCCGggcccccaaUUGACCGcCg -3' miRNA: 3'- -CGCGu--AUGCUGgGCGGC---------AGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 7716 | 0.67 | 0.558509 |
Target: 5'- uGCGCcgaagcuCGugCCGCCGcCGG-CGGCg -3' miRNA: 3'- -CGCGuau----GCugGGCGGCaGCUgGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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