miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 31440 0.67 0.558509
Target:  5'- uGCGCcgcUGCGGCgCGCCGggcccccaaUUGACCGcCg -3'
miRNA:   3'- -CGCGu--AUGCUGgGCGGC---------AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 32141 0.67 0.579595
Target:  5'- aGCGUGUGCGGCCgaUCGUaaCGAUCGAUg -3'
miRNA:   3'- -CGCGUAUGCUGGgcGGCA--GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 32974 0.68 0.506881
Target:  5'- aGCGC---CGGgCaCGCCGUCGccACCGGCu -3'
miRNA:   3'- -CGCGuauGCUgG-GCGGCAGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33218 0.76 0.165021
Target:  5'- uGCGCGUcgaacgcccgcGCGGCCUGCuCGUCGgcaaGCCGAUg -3'
miRNA:   3'- -CGCGUA-----------UGCUGGGCG-GCAGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33351 0.73 0.25592
Target:  5'- aCGCcucgaACGACaCCGCCcguucGUCGGCCGGCg -3'
miRNA:   3'- cGCGua---UGCUG-GGCGG-----CAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33446 0.79 0.105345
Target:  5'- uGCGCGguaguCGAUCCgcagugcuuacacgcGCCGUCGGCCGGCg -3'
miRNA:   3'- -CGCGUau---GCUGGG---------------CGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 33456 0.69 0.447805
Target:  5'- cGCGCGacacGCGcCCCGCCaGUCGcCCG-Ca -3'
miRNA:   3'- -CGCGUa---UGCuGGGCGG-CAGCuGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 33946 0.8 0.088279
Target:  5'- uGCGgAaGCGccGCCCGCuCGUCGGCCGGCg -3'
miRNA:   3'- -CGCgUaUGC--UGGGCG-GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36162 0.71 0.326536
Target:  5'- uGCGCGU-CGACCUGuuGUCGGauGAUc -3'
miRNA:   3'- -CGCGUAuGCUGGGCggCAGCUggCUG- -5'
24842 3' -57.7 NC_005284.1 + 36204 0.7 0.399834
Target:  5'- cCGUAcACGauGCCCGCCGcagucagcgacaCGACCGACg -3'
miRNA:   3'- cGCGUaUGC--UGGGCGGCa-----------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36771 0.84 0.046258
Target:  5'- -aGCGUGacCGugUCGCCGUCGACCGACu -3'
miRNA:   3'- cgCGUAU--GCugGGCGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36900 0.68 0.496791
Target:  5'- uGCGCGaucugcgucgcUGCGAUCUuCCGUUGAUCGAg -3'
miRNA:   3'- -CGCGU-----------AUGCUGGGcGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 36904 0.76 0.173987
Target:  5'- cGCGgAUGCG-CCCGCCGaUCcggGGCCGGCc -3'
miRNA:   3'- -CGCgUAUGCuGGGCGGC-AG---CUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37117 0.66 0.622195
Target:  5'- uCGC--GCGAuCCCGUCGUCGuCCuGCa -3'
miRNA:   3'- cGCGuaUGCU-GGGCGGCAGCuGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 37204 0.67 0.579595
Target:  5'- cGCGUAgcUGACgCCGaugucggUGUUGACCGACa -3'
miRNA:   3'- -CGCGUauGCUG-GGCg------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37710 0.76 0.156473
Target:  5'- cGCGCAUACGGgccgcCCCGCCGaaaGGCCGcGCu -3'
miRNA:   3'- -CGCGUAUGCU-----GGGCGGCag-CUGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 37933 1.11 0.000466
Target:  5'- uGCGCAUACGACCCGCCGUCGACCGACa -3'
miRNA:   3'- -CGCGUAUGCUGGGCGGCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38089 0.68 0.517056
Target:  5'- gGCGCGUcggacgucaGCGGCaCGCCGaCG-CCGGCc -3'
miRNA:   3'- -CGCGUA---------UGCUGgGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38219 0.69 0.419731
Target:  5'- cCGCGUucuggauCGGCgUGCCGUCGAgauagaCCGACu -3'
miRNA:   3'- cGCGUAu------GCUGgGCGGCAGCU------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38757 0.67 0.579595
Target:  5'- gGCGCAaUGCGGauCUCGUCG-CGcCCGACc -3'
miRNA:   3'- -CGCGU-AUGCU--GGGCGGCaGCuGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.