miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 38970 0.66 0.643578
Target:  5'- uGCGCgAUGCuGAUCCGCgGgcugCGcGCUGGCg -3'
miRNA:   3'- -CGCG-UAUG-CUGGGCGgCa---GC-UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39023 0.67 0.537645
Target:  5'- aGCGCAgcaccguCGugCaGCUGUCGGCCcACa -3'
miRNA:   3'- -CGCGUau-----GCugGgCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 39440 0.66 0.622195
Target:  5'- aGC-CAU-CGGCCUGCaCGcCGAgCGACa -3'
miRNA:   3'- -CGcGUAuGCUGGGCG-GCaGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39513 0.74 0.231381
Target:  5'- aGUGCAUGUGguGCUCGCCG-CGGCCGAUg -3'
miRNA:   3'- -CGCGUAUGC--UGGGCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 40108 0.66 0.58914
Target:  5'- uGCGUcgGCauuucuucguucgGGUCCGCCGUCGgauuGCCGGCc -3'
miRNA:   3'- -CGCGuaUG-------------CUGGGCGGCAGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 41601 0.68 0.486792
Target:  5'- cGCGCGcgaGGCCgCGCCGagugCGAgcuCCGACa -3'
miRNA:   3'- -CGCGUaugCUGG-GCGGCa---GCU---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 42105 0.67 0.548046
Target:  5'- cCGUccGCGGCCCgcuggguguaGCCGUCG-CCGAa -3'
miRNA:   3'- cGCGuaUGCUGGG----------CGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 42334 0.72 0.296671
Target:  5'- cGCGgGguucgACGAUCCGCCcUCGAUCGAa -3'
miRNA:   3'- -CGCgUa----UGCUGGGCGGcAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 42370 0.74 0.219873
Target:  5'- cGCGCugacCGAgauCCCGCCGUUGcgcGCCGGCg -3'
miRNA:   3'- -CGCGuau-GCU---GGGCGGCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 42983 0.67 0.537645
Target:  5'- cGCGC--GCGACCUGCUccgccUCGGCCGu- -3'
miRNA:   3'- -CGCGuaUGCUGGGCGGc----AGCUGGCug -5'
24842 3' -57.7 NC_005284.1 + 43288 0.67 0.569027
Target:  5'- uCGCGgACGGCCUGCUGU--AUCGACu -3'
miRNA:   3'- cGCGUaUGCUGGGCGGCAgcUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43457 0.66 0.643578
Target:  5'- cGCGCAguugcGCGAUCCGCUGcCGGauguugUCGAg -3'
miRNA:   3'- -CGCGUa----UGCUGGGCGGCaGCU------GGCUg -5'
24842 3' -57.7 NC_005284.1 + 43831 0.66 0.643578
Target:  5'- uUGUAUGCG-UCCGCuCGUCcggcgacgaGGCCGGCc -3'
miRNA:   3'- cGCGUAUGCuGGGCG-GCAG---------CUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43864 0.68 0.496791
Target:  5'- aGCGCGccguugAUGAUCCGCgCGUCGugUG-Cg -3'
miRNA:   3'- -CGCGUa-----UGCUGGGCG-GCAGCugGCuG- -5'
24842 3' -57.7 NC_005284.1 + 44085 0.67 0.536609
Target:  5'- uGCGCGccuuucUGCGaagcgagGCCCGCCGugUCGAUCG-Cg -3'
miRNA:   3'- -CGCGU------AUGC-------UGGGCGGC--AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 44149 0.7 0.366921
Target:  5'- cGCGCA-GCGcuuCgCCGCCGcUCGucGCCGACa -3'
miRNA:   3'- -CGCGUaUGCu--G-GGCGGC-AGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 44655 0.66 0.632887
Target:  5'- cGCGCGaGCG-CCgucugCGCCGUCG-CCGcGCu -3'
miRNA:   3'- -CGCGUaUGCuGG-----GCGGCAGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 45009 0.67 0.579595
Target:  5'- cGCGCGccguUGCGACgugagcuugCGCCGUCGcCuCGACc -3'
miRNA:   3'- -CGCGU----AUGCUGg--------GCGGCAGCuG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 45436 0.7 0.3754
Target:  5'- cGCGCucGCG-CCCGUCGcUUGAuCCGACu -3'
miRNA:   3'- -CGCGuaUGCuGGGCGGC-AGCU-GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45539 0.66 0.597649
Target:  5'- aGCGUauccGUGCcGCCCGCCGcgcgcgucagcgccUCGAcgagauuaCCGACg -3'
miRNA:   3'- -CGCG----UAUGcUGGGCGGC--------------AGCU--------GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.