miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 31214 0.68 0.47689
Target:  5'- cCGCu--CGACCCGCUc-CGGCUGGCa -3'
miRNA:   3'- cGCGuauGCUGGGCGGcaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 30947 0.72 0.275016
Target:  5'- cCGCcgGCGAUcacccaauguaggCCGCCGUCGGCUGGu -3'
miRNA:   3'- cGCGuaUGCUG-------------GGCGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 30658 0.73 0.25592
Target:  5'- uGUGCGUGCGG-CCGUCGagcagcCGGCCGGCg -3'
miRNA:   3'- -CGCGUAUGCUgGGCGGCa-----GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 30382 0.67 0.552224
Target:  5'- uGCGCu--CGGCCCGCgugugcuggucggcaUGUCGAUCGuCc -3'
miRNA:   3'- -CGCGuauGCUGGGCG---------------GCAGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 30266 0.68 0.47689
Target:  5'- gGCGCGUuCG-UUCGCUGUCGAgUGGCu -3'
miRNA:   3'- -CGCGUAuGCuGGGCGGCAGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 29144 0.68 0.47689
Target:  5'- uGCGCGcAUGACCCGCUgcauauguaGUUuuCCGGCg -3'
miRNA:   3'- -CGCGUaUGCUGGGCGG---------CAGcuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 28686 0.67 0.558509
Target:  5'- gGUGUggACGACUgGCauaucaccgauUGUCGGCCGGCc -3'
miRNA:   3'- -CGCGuaUGCUGGgCG-----------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 28423 0.67 0.579595
Target:  5'- cGCGCGUGuuguagacCGGCgCGCCGgcgUUGACCGuGCc -3'
miRNA:   3'- -CGCGUAU--------GCUGgGCGGC---AGCUGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 27681 0.68 0.496791
Target:  5'- cGCGCAauUGAUCCGUCGUUGcUCGAg -3'
miRNA:   3'- -CGCGUauGCUGGGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 27126 0.66 0.621126
Target:  5'- uGCGCGU---GCCCGCCG-CGACgcaucugCGAUg -3'
miRNA:   3'- -CGCGUAugcUGGGCGGCaGCUG-------GCUG- -5'
24842 3' -57.7 NC_005284.1 + 27106 0.69 0.457393
Target:  5'- -gGCAgcgGCGACCCGCgCGcCacGCCGGCc -3'
miRNA:   3'- cgCGUa--UGCUGGGCG-GCaGc-UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 25565 0.77 0.144401
Target:  5'- cGUGCAUuCGAuCCCGCCGUCcGCgCGGCg -3'
miRNA:   3'- -CGCGUAuGCU-GGGCGGCAGcUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 24531 0.69 0.438331
Target:  5'- aGCGaacgaACGcGCCCGCuCGaCGGCCGACu -3'
miRNA:   3'- -CGCgua--UGC-UGGGCG-GCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 24104 0.74 0.237324
Target:  5'- aGCGCGU-CGGCaagaaaGCCGcCGGCCGGCu -3'
miRNA:   3'- -CGCGUAuGCUGgg----CGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 23448 0.67 0.569027
Target:  5'- aGCGCGUGu--UCUGCgCGUCGcucGCCGACg -3'
miRNA:   3'- -CGCGUAUgcuGGGCG-GCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 23299 0.66 0.622195
Target:  5'- gGCGUGUAU--CCCGgCGUCG-UCGACg -3'
miRNA:   3'- -CGCGUAUGcuGGGCgGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 22107 0.66 0.611511
Target:  5'- gGCGCuUGCGGUCCGCUGgccccCG-CCGAUg -3'
miRNA:   3'- -CGCGuAUGCUGGGCGGCa----GCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 21676 0.77 0.144401
Target:  5'- cGCGUcgGCGGuggCCGCCGUCGACCaACg -3'
miRNA:   3'- -CGCGuaUGCUg--GGCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 21404 0.67 0.527314
Target:  5'- gGUGaugGCGAgCCGUCGgcagcgcCGGCCGACg -3'
miRNA:   3'- -CGCguaUGCUgGGCGGCa------GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 19379 0.7 0.3754
Target:  5'- uGCGaa-GCGAUUCGCCGU-GAUCGACg -3'
miRNA:   3'- -CGCguaUGCUGGGCGGCAgCUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.