Results 101 - 120 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24842 | 3' | -57.7 | NC_005284.1 | + | 39440 | 0.66 | 0.622195 |
Target: 5'- aGC-CAU-CGGCCUGCaCGcCGAgCGACa -3' miRNA: 3'- -CGcGUAuGCUGGGCG-GCaGCUgGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 44655 | 0.66 | 0.632887 |
Target: 5'- cGCGCGaGCG-CCgucugCGCCGUCG-CCGcGCu -3' miRNA: 3'- -CGCGUaUGCuGG-----GCGGCAGCuGGC-UG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 8978 | 0.66 | 0.643578 |
Target: 5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3' miRNA: 3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 43457 | 0.66 | 0.643578 |
Target: 5'- cGCGCAguugcGCGAUCCGCUGcCGGauguugUCGAg -3' miRNA: 3'- -CGCGUa----UGCUGGGCGGCaGCU------GGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 5425 | 0.67 | 0.579595 |
Target: 5'- cGCGCucgGCGAa--GCUG-CGACCGAUa -3' miRNA: 3'- -CGCGua-UGCUgggCGGCaGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 38757 | 0.67 | 0.579595 |
Target: 5'- gGCGCAaUGCGGauCUCGUCG-CGcCCGACc -3' miRNA: 3'- -CGCGU-AUGCU--GGGCGGCaGCuGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 7499 | 0.67 | 0.536609 |
Target: 5'- cGCGCGUugaucacGCGGCgaCgGCCGUCGAUC-ACg -3' miRNA: 3'- -CGCGUA-------UGCUG--GgCGGCAGCUGGcUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 39023 | 0.67 | 0.537645 |
Target: 5'- aGCGCAgcaccguCGugCaGCUGUCGGCCcACa -3' miRNA: 3'- -CGCGUau-----GCugGgCGGCAGCUGGcUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 42983 | 0.67 | 0.537645 |
Target: 5'- cGCGC--GCGACCUGCUccgccUCGGCCGu- -3' miRNA: 3'- -CGCGuaUGCUGGGCGGc----AGCUGGCug -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 42105 | 0.67 | 0.548046 |
Target: 5'- cCGUccGCGGCCCgcuggguguaGCCGUCG-CCGAa -3' miRNA: 3'- cGCGuaUGCUGGG----------CGGCAGCuGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 5889 | 0.67 | 0.55746 |
Target: 5'- gGCGCA-GCGACaccuucgCCGCCGggCGuguccacggcGCCGACu -3' miRNA: 3'- -CGCGUaUGCUG-------GGCGGCa-GC----------UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 6275 | 0.67 | 0.558509 |
Target: 5'- cGCGCGUAUucccacGCCCGCCcuUCGACUcGCu -3' miRNA: 3'- -CGCGUAUGc-----UGGGCGGc-AGCUGGcUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 50520 | 0.67 | 0.558509 |
Target: 5'- cCGgGUGCGAgUCGCCGccgcucuugCGGCCGAa -3' miRNA: 3'- cGCgUAUGCUgGGCGGCa--------GCUGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 46876 | 0.67 | 0.567973 |
Target: 5'- aGCGCuu-CGAUCCagaacauGCgGUCG-CCGACg -3' miRNA: 3'- -CGCGuauGCUGGG-------CGgCAGCuGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 989 | 0.67 | 0.569027 |
Target: 5'- uGCGCAUgaccaagauGCG-CUCGCCGcagCaGCCGGCa -3' miRNA: 3'- -CGCGUA---------UGCuGGGCGGCa--GcUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 23448 | 0.67 | 0.569027 |
Target: 5'- aGCGCGUGu--UCUGCgCGUCGcucGCCGACg -3' miRNA: 3'- -CGCGUAUgcuGGGCG-GCAGC---UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 9575 | 0.67 | 0.569027 |
Target: 5'- cGCGCu--CGAUCUcguGCCGuUCGACaCGGCc -3' miRNA: 3'- -CGCGuauGCUGGG---CGGC-AGCUG-GCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 50857 | 0.67 | 0.579595 |
Target: 5'- -aGCGUGCGAaucCCCGUuuuuuCGUUGuaauCCGACg -3' miRNA: 3'- cgCGUAUGCU---GGGCG-----GCAGCu---GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 32141 | 0.67 | 0.579595 |
Target: 5'- aGCGUGUGCGGCCgaUCGUaaCGAUCGAUg -3' miRNA: 3'- -CGCGUAUGCUGGgcGGCA--GCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 43831 | 0.66 | 0.643578 |
Target: 5'- uUGUAUGCG-UCCGCuCGUCcggcgacgaGGCCGGCc -3' miRNA: 3'- cGCGUAUGCuGGGCG-GCAG---------CUGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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