miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 50520 0.67 0.558509
Target:  5'- cCGgGUGCGAgUCGCCGccgcucuugCGGCCGAa -3'
miRNA:   3'- cGCgUAUGCUgGGCGGCa--------GCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 23448 0.67 0.569027
Target:  5'- aGCGCGUGu--UCUGCgCGUCGcucGCCGACg -3'
miRNA:   3'- -CGCGUAUgcuGGGCG-GCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 9230 0.66 0.590203
Target:  5'- uGCGCGgGCGACgCGCCacgCGG-CGGCa -3'
miRNA:   3'- -CGCGUaUGCUGgGCGGca-GCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 44655 0.66 0.632887
Target:  5'- cGCGCGaGCG-CCgucugCGCCGUCG-CCGcGCu -3'
miRNA:   3'- -CGCGUaUGCuGG-----GCGGCAGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 38089 0.68 0.517056
Target:  5'- gGCGCGUcggacgucaGCGGCaCGCCGaCG-CCGGCc -3'
miRNA:   3'- -CGCGUA---------UGCUGgGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39023 0.67 0.537645
Target:  5'- aGCGCAgcaccguCGugCaGCUGUCGGCCcACa -3'
miRNA:   3'- -CGCGUau-----GCugGgCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 50857 0.67 0.579595
Target:  5'- -aGCGUGCGAaucCCCGUuuuuuCGUUGuaauCCGACg -3'
miRNA:   3'- cgCGUAUGCU---GGGCG-----GCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 8978 0.66 0.643578
Target:  5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3'
miRNA:   3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 42983 0.67 0.537645
Target:  5'- cGCGC--GCGACCUGCUccgccUCGGCCGu- -3'
miRNA:   3'- -CGCGuaUGCUGGGCGGc----AGCUGGCug -5'
24842 3' -57.7 NC_005284.1 + 43457 0.66 0.643578
Target:  5'- cGCGCAguugcGCGAUCCGCUGcCGGauguugUCGAg -3'
miRNA:   3'- -CGCGUa----UGCUGGGCGGCaGCU------GGCUg -5'
24842 3' -57.7 NC_005284.1 + 9575 0.67 0.569027
Target:  5'- cGCGCu--CGAUCUcguGCCGuUCGACaCGGCc -3'
miRNA:   3'- -CGCGuauGCUGGG---CGGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 6275 0.67 0.558509
Target:  5'- cGCGCGUAUucccacGCCCGCCcuUCGACUcGCu -3'
miRNA:   3'- -CGCGUAUGc-----UGGGCGGc-AGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 5425 0.67 0.579595
Target:  5'- cGCGCucgGCGAa--GCUG-CGACCGAUa -3'
miRNA:   3'- -CGCGua-UGCUgggCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 40108 0.66 0.58914
Target:  5'- uGCGUcgGCauuucuucguucgGGUCCGCCGUCGgauuGCCGGCc -3'
miRNA:   3'- -CGCGuaUG-------------CUGGGCGGCAGC----UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 22107 0.66 0.611511
Target:  5'- gGCGCuUGCGGUCCGCUGgccccCG-CCGAUg -3'
miRNA:   3'- -CGCGuAUGCUGGGCGGCa----GCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39440 0.66 0.622195
Target:  5'- aGC-CAU-CGGCCUGCaCGcCGAgCGACa -3'
miRNA:   3'- -CGcGUAuGCUGGGCG-GCaGCUgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 31214 0.68 0.47689
Target:  5'- cCGCu--CGACCCGCUc-CGGCUGGCa -3'
miRNA:   3'- cGCGuauGCUGGGCGGcaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 32974 0.68 0.506881
Target:  5'- aGCGC---CGGgCaCGCCGUCGccACCGGCu -3'
miRNA:   3'- -CGCGuauGCUgG-GCGGCAGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 3701 0.67 0.527314
Target:  5'- cCGCAUuuCGAUuuggCCGUCGUCGAgcUCGACa -3'
miRNA:   3'- cGCGUAu-GCUG----GGCGGCAGCU--GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 7499 0.67 0.536609
Target:  5'- cGCGCGUugaucacGCGGCgaCgGCCGUCGAUC-ACg -3'
miRNA:   3'- -CGCGUA-------UGCUG--GgCGGCAGCUGGcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.