miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 9575 0.67 0.569027
Target:  5'- cGCGCu--CGAUCUcguGCCGuUCGACaCGGCc -3'
miRNA:   3'- -CGCGuauGCUGGG---CGGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 44655 0.66 0.632887
Target:  5'- cGCGCGaGCG-CCgucugCGCCGUCG-CCGcGCu -3'
miRNA:   3'- -CGCGUaUGCuGG-----GCGGCAGCuGGC-UG- -5'
24842 3' -57.7 NC_005284.1 + 17162 0.67 0.527314
Target:  5'- cGUGCuguuucuCGugCUGCUGUCGAUCGuCa -3'
miRNA:   3'- -CGCGuau----GCugGGCGGCAGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 8978 0.66 0.643578
Target:  5'- aGUGCGUGCGgacACCuuCGCCGagcauGCCGACg -3'
miRNA:   3'- -CGCGUAUGC---UGG--GCGGCagc--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 6785 0.77 0.14714
Target:  5'- cGCGCGUcACG-CCCGCgaauuccgcaauggCGUCGAUCGACg -3'
miRNA:   3'- -CGCGUA-UGCuGGGCG--------------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 37117 0.66 0.622195
Target:  5'- uCGC--GCGAuCCCGUCGUCGuCCuGCa -3'
miRNA:   3'- cGCGuaUGCU-GGGCGGCAGCuGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 7325 0.66 0.600845
Target:  5'- -aGCAUGCGAgCCaucuucucgGCCcgGUUGAUCGGCg -3'
miRNA:   3'- cgCGUAUGCUgGG---------CGG--CAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 42370 0.74 0.219873
Target:  5'- cGCGCugacCGAgauCCCGCCGUUGcgcGCCGGCg -3'
miRNA:   3'- -CGCGuau-GCU---GGGCGGCAGC---UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 24104 0.74 0.237324
Target:  5'- aGCGCGU-CGGCaagaaaGCCGcCGGCCGGCu -3'
miRNA:   3'- -CGCGUAuGCUGgg----CGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45436 0.7 0.3754
Target:  5'- cGCGCucGCG-CCCGUCGcUUGAuCCGACu -3'
miRNA:   3'- -CGCGuaUGCuGGGCGGC-AGCU-GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38219 0.69 0.419731
Target:  5'- cCGCGUucuggauCGGCgUGCCGUCGAgauagaCCGACu -3'
miRNA:   3'- cGCGUAu------GCUGgGCGGCAGCU------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 27106 0.69 0.457393
Target:  5'- -gGCAgcgGCGACCCGCgCGcCacGCCGGCc -3'
miRNA:   3'- cgCGUa--UGCUGGGCG-GCaGc-UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45853 0.68 0.505868
Target:  5'- cGCGUuguuUGCGAUCCGCUGauacagcUCGGCUGuCg -3'
miRNA:   3'- -CGCGu---AUGCUGGGCGGC-------AGCUGGCuG- -5'
24842 3' -57.7 NC_005284.1 + 43457 0.66 0.643578
Target:  5'- cGCGCAguugcGCGAUCCGCUGcCGGauguugUCGAg -3'
miRNA:   3'- -CGCGUa----UGCUGGGCGGCaGCU------GGCUg -5'
24842 3' -57.7 NC_005284.1 + 14978 0.67 0.527314
Target:  5'- uGCgGCAcGCGGCCCGguugaagcUCGaauaCGACCGACg -3'
miRNA:   3'- -CG-CGUaUGCUGGGC--------GGCa---GCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39023 0.67 0.537645
Target:  5'- aGCGCAgcaccguCGugCaGCUGUCGGCCcACa -3'
miRNA:   3'- -CGCGUau-----GCugGgCGGCAGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 6275 0.67 0.558509
Target:  5'- cGCGCGUAUucccacGCCCGCCcuUCGACUcGCu -3'
miRNA:   3'- -CGCGUAUGc-----UGGGCGGc-AGCUGGcUG- -5'
24842 3' -57.7 NC_005284.1 + 989 0.67 0.569027
Target:  5'- uGCGCAUgaccaagauGCG-CUCGCCGcagCaGCCGGCa -3'
miRNA:   3'- -CGCGUA---------UGCuGGGCGGCa--GcUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 38757 0.67 0.579595
Target:  5'- gGCGCAaUGCGGauCUCGUCG-CGcCCGACc -3'
miRNA:   3'- -CGCGU-AUGCU--GGGCGGCaGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45009 0.67 0.579595
Target:  5'- cGCGCGccguUGCGACgugagcuugCGCCGUCGcCuCGACc -3'
miRNA:   3'- -CGCGU----AUGCUGg--------GCGGCAGCuG-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.