miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24842 3' -57.7 NC_005284.1 + 41601 0.68 0.486792
Target:  5'- cGCGCGcgaGGCCgCGCCGagugCGAgcuCCGACa -3'
miRNA:   3'- -CGCGUaugCUGG-GCGGCa---GCU---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 43864 0.68 0.496791
Target:  5'- aGCGCGccguugAUGAUCCGCgCGUCGugUG-Cg -3'
miRNA:   3'- -CGCGUa-----UGCUGGGCG-GCAGCugGCuG- -5'
24842 3' -57.7 NC_005284.1 + 47899 0.68 0.496791
Target:  5'- cGCGCuUGCGcgagcaguuCCCGCCGaCGGCCa-- -3'
miRNA:   3'- -CGCGuAUGCu--------GGGCGGCaGCUGGcug -5'
24842 3' -57.7 NC_005284.1 + 10081 0.66 0.639302
Target:  5'- cGCGCGgcgaccGCGACCgCGgCGggucugaagacggCGACCGAa -3'
miRNA:   3'- -CGCGUa-----UGCUGG-GCgGCa------------GCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 47626 0.68 0.496791
Target:  5'- cGCGCugaagcuUGCGAa--GCUGUCGcCCGACg -3'
miRNA:   3'- -CGCGu------AUGCUgggCGGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 39513 0.74 0.231381
Target:  5'- aGUGCAUGUGguGCUCGCCG-CGGCCGAUg -3'
miRNA:   3'- -CGCGUAUGC--UGGGCGGCaGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 46435 0.66 0.622195
Target:  5'- -aGCGaACGAaccgaUCGCCGUCG-CCGAa -3'
miRNA:   3'- cgCGUaUGCUg----GGCGGCAGCuGGCUg -5'
24842 3' -57.7 NC_005284.1 + 36162 0.71 0.326536
Target:  5'- uGCGCGU-CGACCUGuuGUCGGauGAUc -3'
miRNA:   3'- -CGCGUAuGCUGGGCggCAGCUggCUG- -5'
24842 3' -57.7 NC_005284.1 + 6783 0.71 0.334343
Target:  5'- cGUuCAUGCGGCCgGCguuugaugCGUCGAUCGGCg -3'
miRNA:   3'- -CGcGUAUGCUGGgCG--------GCAGCUGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 16296 0.66 0.622195
Target:  5'- uGCGCAggGCGAgCCgguGCCGcUCGucAUCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUgGG---CGGC-AGC--UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 27126 0.66 0.621126
Target:  5'- uGCGCGU---GCCCGCCG-CGACgcaucugCGAUg -3'
miRNA:   3'- -CGCGUAugcUGGGCGGCaGCUG-------GCUG- -5'
24842 3' -57.7 NC_005284.1 + 8887 0.66 0.622195
Target:  5'- uGCGCAUcgcgcGCGACacaCGgcaaCCGcUCGACgCGACa -3'
miRNA:   3'- -CGCGUA-----UGCUGg--GC----GGC-AGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 51585 0.66 0.622195
Target:  5'- uCGCGUugG-CUggaGCCGUCGuuccCCGGCa -3'
miRNA:   3'- cGCGUAugCuGGg--CGGCAGCu---GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 14582 0.66 0.631817
Target:  5'- uGCGCuugGCGAUCuCGUCGgcgCGAaaguguuCCGGCg -3'
miRNA:   3'- -CGCGua-UGCUGG-GCGGCa--GCU-------GGCUG- -5'
24842 3' -57.7 NC_005284.1 + 9586 0.66 0.632887
Target:  5'- aGCGCAggGCGAUCgCGCUGcCGcGgCGGCg -3'
miRNA:   3'- -CGCGUa-UGCUGG-GCGGCaGC-UgGCUG- -5'
24842 3' -57.7 NC_005284.1 + 45691 0.66 0.600845
Target:  5'- aCGCcuucACGA-CCGCgCGUCGACaCGGCu -3'
miRNA:   3'- cGCGua--UGCUgGGCG-GCAGCUG-GCUG- -5'
24842 3' -57.7 NC_005284.1 + 38970 0.66 0.643578
Target:  5'- uGCGCgAUGCuGAUCCGCgGgcugCGcGCUGGCg -3'
miRNA:   3'- -CGCG-UAUG-CUGGGCGgCa---GC-UGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 23299 0.66 0.622195
Target:  5'- gGCGUGUAU--CCCGgCGUCG-UCGACg -3'
miRNA:   3'- -CGCGUAUGcuGGGCgGCAGCuGGCUG- -5'
24842 3' -57.7 NC_005284.1 + 36900 0.68 0.496791
Target:  5'- uGCGCGaucugcgucgcUGCGAUCUuCCGUUGAUCGAg -3'
miRNA:   3'- -CGCGU-----------AUGCUGGGcGGCAGCUGGCUg -5'
24842 3' -57.7 NC_005284.1 + 11694 0.7 0.366921
Target:  5'- cGCGUgaGCGACgaguuUCGCCGUCGACgGgACg -3'
miRNA:   3'- -CGCGuaUGCUG-----GGCGGCAGCUGgC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.