Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24842 | 3' | -57.7 | NC_005284.1 | + | 10932 | 0.66 | 0.600845 |
Target: 5'- uGCGCA---GGCCCGCa--UGGCCGGCc -3' miRNA: 3'- -CGCGUaugCUGGGCGgcaGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 37204 | 0.67 | 0.579595 |
Target: 5'- cGCGUAgcUGACgCCGaugucggUGUUGACCGACa -3' miRNA: 3'- -CGCGUauGCUG-GGCg------GCAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 2893 | 0.67 | 0.579595 |
Target: 5'- -gGguUGCGACCaucaggugUGCUcUCGACCGACc -3' miRNA: 3'- cgCguAUGCUGG--------GCGGcAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 53662 | 0.67 | 0.577478 |
Target: 5'- uGUGCAgGCGGCaacucgaucaaGUCGUCGACgGGCa -3' miRNA: 3'- -CGCGUaUGCUGgg---------CGGCAGCUGgCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 43288 | 0.67 | 0.569027 |
Target: 5'- uCGCGgACGGCCUGCUGU--AUCGACu -3' miRNA: 3'- cGCGUaUGCUGGGCGGCAgcUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 31440 | 0.67 | 0.558509 |
Target: 5'- uGCGCcgcUGCGGCgCGCCGggcccccaaUUGACCGcCg -3' miRNA: 3'- -CGCGu--AUGCUGgGCGGC---------AGCUGGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 28686 | 0.67 | 0.558509 |
Target: 5'- gGUGUggACGACUgGCauaucaccgauUGUCGGCCGGCc -3' miRNA: 3'- -CGCGuaUGCUGGgCG-----------GCAGCUGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 23299 | 0.66 | 0.622195 |
Target: 5'- gGCGUGUAU--CCCGgCGUCG-UCGACg -3' miRNA: 3'- -CGCGUAUGcuGGGCgGCAGCuGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 8887 | 0.66 | 0.622195 |
Target: 5'- uGCGCAUcgcgcGCGACacaCGgcaaCCGcUCGACgCGACa -3' miRNA: 3'- -CGCGUA-----UGCUGg--GC----GGC-AGCUG-GCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 43864 | 0.68 | 0.496791 |
Target: 5'- aGCGCGccguugAUGAUCCGCgCGUCGugUG-Cg -3' miRNA: 3'- -CGCGUa-----UGCUGGGCG-GCAGCugGCuG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 47899 | 0.68 | 0.496791 |
Target: 5'- cGCGCuUGCGcgagcaguuCCCGCCGaCGGCCa-- -3' miRNA: 3'- -CGCGuAUGCu--------GGGCGGCaGCUGGcug -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 36900 | 0.68 | 0.496791 |
Target: 5'- uGCGCGaucugcgucgcUGCGAUCUuCCGUUGAUCGAg -3' miRNA: 3'- -CGCGU-----------AUGCUGGGcGGCAGCUGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 47626 | 0.68 | 0.496791 |
Target: 5'- cGCGCugaagcuUGCGAa--GCUGUCGcCCGACg -3' miRNA: 3'- -CGCGu------AUGCUgggCGGCAGCuGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 48022 | 0.68 | 0.496791 |
Target: 5'- cGCGCG--UGACCgUGUCGUCGACCc-- -3' miRNA: 3'- -CGCGUauGCUGG-GCGGCAGCUGGcug -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 27126 | 0.66 | 0.621126 |
Target: 5'- uGCGCGU---GCCCGCCG-CGACgcaucugCGAUg -3' miRNA: 3'- -CGCGUAugcUGGGCGGCaGCUG-------GCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 38970 | 0.66 | 0.643578 |
Target: 5'- uGCGCgAUGCuGAUCCGCgGgcugCGcGCUGGCg -3' miRNA: 3'- -CGCG-UAUG-CUGGGCGgCa---GC-UGGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 10081 | 0.66 | 0.639302 |
Target: 5'- cGCGCGgcgaccGCGACCgCGgCGggucugaagacggCGACCGAa -3' miRNA: 3'- -CGCGUa-----UGCUGG-GCgGCa------------GCUGGCUg -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 9586 | 0.66 | 0.632887 |
Target: 5'- aGCGCAggGCGAUCgCGCUGcCGcGgCGGCg -3' miRNA: 3'- -CGCGUa-UGCUGG-GCGGCaGC-UgGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 14582 | 0.66 | 0.631817 |
Target: 5'- uGCGCuugGCGAUCuCGUCGgcgCGAaaguguuCCGGCg -3' miRNA: 3'- -CGCGua-UGCUGG-GCGGCa--GCU-------GGCUG- -5' |
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24842 | 3' | -57.7 | NC_005284.1 | + | 51585 | 0.66 | 0.622195 |
Target: 5'- uCGCGUugG-CUggaGCCGUCGuuccCCGGCa -3' miRNA: 3'- cGCGUAugCuGGg--CGGCAGCu---GGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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