miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 48206 0.69 0.40706
Target:  5'- gGCGcGCGCuuACGCgccucgucacGGAUCAccuucgcACCAGCCAc -3'
miRNA:   3'- aCGC-CGCG--UGCG----------CCUAGU-------UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 15271 0.69 0.445924
Target:  5'- -cCGGCGCAU-CGGcaCAGCCGACCGa -3'
miRNA:   3'- acGCCGCGUGcGCCuaGUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 14273 0.69 0.417279
Target:  5'- aUGCGGCGUuacaggACGCGG-UCAAgCGgauuGCCGa -3'
miRNA:   3'- -ACGCCGCG------UGCGCCuAGUUgGU----UGGU- -5'
24843 3' -57 NC_005284.1 + 16756 0.69 0.445924
Target:  5'- cUGCGGUGCGCGUGcgcuucGGUguGCCGGCg- -3'
miRNA:   3'- -ACGCCGCGUGCGC------CUAguUGGUUGgu -5'
24843 3' -57 NC_005284.1 + 34851 0.69 0.436253
Target:  5'- cGCacaGGCGCACGauugGGAUCGGCuCGACa- -3'
miRNA:   3'- aCG---CCGCGUGCg---CCUAGUUG-GUUGgu -5'
24843 3' -57 NC_005284.1 + 53403 0.68 0.455714
Target:  5'- cGCcaGCaCGCGCGGAUCGGuCCAAUCGu -3'
miRNA:   3'- aCGc-CGcGUGCGCCUAGUU-GGUUGGU- -5'
24843 3' -57 NC_005284.1 + 5458 0.68 0.455714
Target:  5'- cGUcGCGCACGCGuGccguGCCAACCAu -3'
miRNA:   3'- aCGcCGCGUGCGC-CuaguUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 6364 0.68 0.455714
Target:  5'- cGCGGCGaUugGCGcGUCuuCgCAGCCAa -3'
miRNA:   3'- aCGCCGC-GugCGCcUAGuuG-GUUGGU- -5'
24843 3' -57 NC_005284.1 + 6845 0.68 0.465619
Target:  5'- -uUGGCGCGCGCG-AUCGAUCGugUg -3'
miRNA:   3'- acGCCGCGUGCGCcUAGUUGGUugGu -5'
24843 3' -57 NC_005284.1 + 22757 0.68 0.465619
Target:  5'- cUGCGGUcgaucaagggGCGCGCGaucGUCAGCCucaacGACCAu -3'
miRNA:   3'- -ACGCCG----------CGUGCGCc--UAGUUGG-----UUGGU- -5'
24843 3' -57 NC_005284.1 + 8655 0.68 0.475634
Target:  5'- gGCgGGCGCACaGCGGAUgCGGCguuuGCCu -3'
miRNA:   3'- aCG-CCGCGUG-CGCCUA-GUUGgu--UGGu -5'
24843 3' -57 NC_005284.1 + 34254 0.68 0.495978
Target:  5'- cUGCGGCGUAacUGCGcGcgCAGCCAGuuUCAg -3'
miRNA:   3'- -ACGCCGCGU--GCGC-CuaGUUGGUU--GGU- -5'
24843 3' -57 NC_005284.1 + 15898 0.67 0.569897
Target:  5'- gGCGGUGCGCGCGcuAUCGGugcugauucCCGGCUu -3'
miRNA:   3'- aCGCCGCGUGCGCc-UAGUU---------GGUUGGu -5'
24843 3' -57 NC_005284.1 + 50276 0.67 0.527201
Target:  5'- --aGGCGaucgugaaGCGGAUCAagcgGCCGACCGu -3'
miRNA:   3'- acgCCGCgug-----CGCCUAGU----UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 51749 0.67 0.527201
Target:  5'- cGCGGCGCGCcuGCGGGaaguggaggcgUUAGCgguaGGCCGg -3'
miRNA:   3'- aCGCCGCGUG--CGCCU-----------AGUUGg---UUGGU- -5'
24843 3' -57 NC_005284.1 + 3742 0.67 0.531421
Target:  5'- cUGUGGCaGCACGaCuccuauacgccgaucGGAUCAuggGCCGGCCu -3'
miRNA:   3'- -ACGCCG-CGUGC-G---------------CCUAGU---UGGUUGGu -5'
24843 3' -57 NC_005284.1 + 26308 0.67 0.542024
Target:  5'- cUGCGGCGCGugcgaGCGGAaagcauggacauucuUCAGCgCGGCaCGg -3'
miRNA:   3'- -ACGCCGCGUg----CGCCU---------------AGUUG-GUUG-GU- -5'
24843 3' -57 NC_005284.1 + 50331 0.67 0.559129
Target:  5'- gGCGGCGUGcCGCGGcg-AACCGugCu -3'
miRNA:   3'- aCGCCGCGU-GCGCCuagUUGGUugGu -5'
24843 3' -57 NC_005284.1 + 46586 0.67 0.569897
Target:  5'- gGCGGCGCA-GUGGG-CAAC--GCCGa -3'
miRNA:   3'- aCGCCGCGUgCGCCUaGUUGguUGGU- -5'
24843 3' -57 NC_005284.1 + 49388 0.67 0.569897
Target:  5'- aGCuGGCGCGCcgcaCGGG-CAAgCAGCCGa -3'
miRNA:   3'- aCG-CCGCGUGc---GCCUaGUUgGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.