miRNA display CGI


Results 41 - 52 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 53333 0.71 0.338475
Target:  5'- aGCGGaCGCACuGCGGcuGUCGcuucGCCAGCgCAg -3'
miRNA:   3'- aCGCC-GCGUG-CGCC--UAGU----UGGUUG-GU- -5'
24843 3' -57 NC_005284.1 + 31447 0.71 0.30709
Target:  5'- cUGCGGCGCGC-CGGGccccCAAUUGACCGc -3'
miRNA:   3'- -ACGCCGCGUGcGCCUa---GUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 21328 0.72 0.2996
Target:  5'- cGaCGGCGCGuguaagcacUGCGGAUCGACUA-CCGc -3'
miRNA:   3'- aC-GCCGCGU---------GCGCCUAGUUGGUuGGU- -5'
24843 3' -57 NC_005284.1 + 9499 0.72 0.277981
Target:  5'- gGCGGCGacaGCGUGGGUCGGcgcCCGGCgAg -3'
miRNA:   3'- aCGCCGCg--UGCGCCUAGUU---GGUUGgU- -5'
24843 3' -57 NC_005284.1 + 38755 0.72 0.277981
Target:  5'- -cCGGCGCaAUGCGGAUCucgucgcgcCCGACCGg -3'
miRNA:   3'- acGCCGCG-UGCGCCUAGuu-------GGUUGGU- -5'
24843 3' -57 NC_005284.1 + 23584 0.73 0.238501
Target:  5'- cGCGGCGaugcUACGCGaGAUCGgaAUCGACCGa -3'
miRNA:   3'- aCGCCGC----GUGCGC-CUAGU--UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 18929 0.74 0.209281
Target:  5'- aGCuGCGCGCGCcGAUCGACCuAAUCAc -3'
miRNA:   3'- aCGcCGCGUGCGcCUAGUUGG-UUGGU- -5'
24843 3' -57 NC_005284.1 + 19407 0.74 0.203821
Target:  5'- gGCGGUGCAgGCGuGAUCGGCgcGCCGu -3'
miRNA:   3'- aCGCCGCGUgCGC-CUAGUUGguUGGU- -5'
24843 3' -57 NC_005284.1 + 40482 0.74 0.198485
Target:  5'- gUGUGGCGaagACGCGGAUCAGCCu---- -3'
miRNA:   3'- -ACGCCGCg--UGCGCCUAGUUGGuuggu -5'
24843 3' -57 NC_005284.1 + 47785 0.75 0.183202
Target:  5'- gGCGGCGCuCGCGGAggCGACgGGCgAg -3'
miRNA:   3'- aCGCCGCGuGCGCCUa-GUUGgUUGgU- -5'
24843 3' -57 NC_005284.1 + 24378 0.78 0.114892
Target:  5'- cGUcGCGCACGCGGAcgaUCGacauGCCGACCAg -3'
miRNA:   3'- aCGcCGCGUGCGCCU---AGU----UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 37826 1.08 0.00069
Target:  5'- aUGCGGCGCACGCGGAUCAACCAACCAu -3'
miRNA:   3'- -ACGCCGCGUGCGCCUAGUUGGUUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.