miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 22757 0.68 0.465619
Target:  5'- cUGCGGUcgaucaagggGCGCGCGaucGUCAGCCucaacGACCAu -3'
miRNA:   3'- -ACGCCG----------CGUGCGCc--UAGUUGG-----UUGGU- -5'
24843 3' -57 NC_005284.1 + 23121 0.67 0.548419
Target:  5'- cGCuGGCGCA-GCGGcaAUgAGCCGcuGCCAg -3'
miRNA:   3'- aCG-CCGCGUgCGCC--UAgUUGGU--UGGU- -5'
24843 3' -57 NC_005284.1 + 23584 0.73 0.238501
Target:  5'- cGCGGCGaugcUACGCGaGAUCGgaAUCGACCGa -3'
miRNA:   3'- aCGCCGC----GUGCGC-CUAGU--UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 24378 0.78 0.114892
Target:  5'- cGUcGCGCACGCGGAcgaUCGacauGCCGACCAg -3'
miRNA:   3'- aCGcCGCGUGCGCCU---AGU----UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 26308 0.67 0.542024
Target:  5'- cUGCGGCGCGugcgaGCGGAaagcauggacauucuUCAGCgCGGCaCGg -3'
miRNA:   3'- -ACGCCGCGUg----CGCCU---------------AGUUG-GUUG-GU- -5'
24843 3' -57 NC_005284.1 + 27091 0.7 0.352501
Target:  5'- aGCGGCGCcccauacucgagcaACGaCGGAUCAauugcgcguGCCcGCCGc -3'
miRNA:   3'- aCGCCGCG--------------UGC-GCCUAGU---------UGGuUGGU- -5'
24843 3' -57 NC_005284.1 + 27239 0.71 0.338475
Target:  5'- cUGCaGCGCACGCGGccaaUAGCCgAACCc -3'
miRNA:   3'- -ACGcCGCGUGCGCCua--GUUGG-UUGGu -5'
24843 3' -57 NC_005284.1 + 27677 0.7 0.355019
Target:  5'- gGcCGGCGUggcGCGCGGGUC-GCCGcuGCCu -3'
miRNA:   3'- aC-GCCGCG---UGCGCCUAGuUGGU--UGGu -5'
24843 3' -57 NC_005284.1 + 31049 0.71 0.346676
Target:  5'- aUGUGGaa-GCGCaGGUCAACCGACCc -3'
miRNA:   3'- -ACGCCgcgUGCGcCUAGUUGGUUGGu -5'
24843 3' -57 NC_005284.1 + 31447 0.71 0.30709
Target:  5'- cUGCGGCGCGC-CGGGccccCAAUUGACCGc -3'
miRNA:   3'- -ACGCCGCGUGcGCCUa---GUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 32962 0.66 0.580715
Target:  5'- gGCGGCGCuggaaGCGcCGGG-CAcGCCGucGCCAc -3'
miRNA:   3'- aCGCCGCG-----UGC-GCCUaGU-UGGU--UGGU- -5'
24843 3' -57 NC_005284.1 + 33178 0.7 0.372125
Target:  5'- cGCGGCGCGCGa-GAUCuugcCCAACg- -3'
miRNA:   3'- aCGCCGCGUGCgcCUAGuu--GGUUGgu -5'
24843 3' -57 NC_005284.1 + 34254 0.68 0.495978
Target:  5'- cUGCGGCGUAacUGCGcGcgCAGCCAGuuUCAg -3'
miRNA:   3'- -ACGCCGCGU--GCGC-CuaGUUGGUU--GGU- -5'
24843 3' -57 NC_005284.1 + 34851 0.69 0.436253
Target:  5'- cGCacaGGCGCACGauugGGAUCGGCuCGACa- -3'
miRNA:   3'- aCG---CCGCGUGCg---CCUAGUUG-GUUGgu -5'
24843 3' -57 NC_005284.1 + 36537 0.66 0.591576
Target:  5'- gGCGGCuGCACcgaugGCGGAacgaUCGugAUCGGCCGu -3'
miRNA:   3'- aCGCCG-CGUG-----CGCCU----AGU--UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 37826 1.08 0.00069
Target:  5'- aUGCGGCGCACGCGGAUCAACCAACCAu -3'
miRNA:   3'- -ACGCCGCGUGCGCCUAGUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 38755 0.72 0.277981
Target:  5'- -cCGGCGCaAUGCGGAUCucgucgcgcCCGACCGg -3'
miRNA:   3'- acGCCGCG-UGCGCCUAGuu-------GGUUGGU- -5'
24843 3' -57 NC_005284.1 + 40482 0.74 0.198485
Target:  5'- gUGUGGCGaagACGCGGAUCAGCCu---- -3'
miRNA:   3'- -ACGCCGCg--UGCGCCUAGUUGGuuggu -5'
24843 3' -57 NC_005284.1 + 43623 0.67 0.537774
Target:  5'- cGCGGCgGC-CGCGGcgcgagcugcGUCAGCauugaAGCCGa -3'
miRNA:   3'- aCGCCG-CGuGCGCC----------UAGUUGg----UUGGU- -5'
24843 3' -57 NC_005284.1 + 45442 0.7 0.380887
Target:  5'- cGCGGCGU-CGCGauuGUCGGgCGACCAg -3'
miRNA:   3'- aCGCCGCGuGCGCc--UAGUUgGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.