miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24843 3' -57 NC_005284.1 + 15898 0.67 0.569897
Target:  5'- gGCGGUGCGCGCGcuAUCGGugcugauucCCGGCUu -3'
miRNA:   3'- aCGCCGCGUGCGCc-UAGUU---------GGUUGGu -5'
24843 3' -57 NC_005284.1 + 49388 0.67 0.569897
Target:  5'- aGCuGGCGCGCcgcaCGGG-CAAgCAGCCGa -3'
miRNA:   3'- aCG-CCGCGUGc---GCCUaGUUgGUUGGU- -5'
24843 3' -57 NC_005284.1 + 31447 0.71 0.30709
Target:  5'- cUGCGGCGCGC-CGGGccccCAAUUGACCGc -3'
miRNA:   3'- -ACGCCGCGUGcGCCUa---GUUGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 12150 0.66 0.580715
Target:  5'- gUGCGGCaaGCGCGGcuGUCGGCuCGaacGCCu -3'
miRNA:   3'- -ACGCCGcgUGCGCC--UAGUUG-GU---UGGu -5'
24843 3' -57 NC_005284.1 + 26308 0.67 0.542024
Target:  5'- cUGCGGCGCGugcgaGCGGAaagcauggacauucuUCAGCgCGGCaCGg -3'
miRNA:   3'- -ACGCCGCGUg----CGCCU---------------AGUUG-GUUG-GU- -5'
24843 3' -57 NC_005284.1 + 3742 0.67 0.531421
Target:  5'- cUGUGGCaGCACGaCuccuauacgccgaucGGAUCAuggGCCGGCCu -3'
miRNA:   3'- -ACGCCG-CGUGC-G---------------CCUAGU---UGGUUGGu -5'
24843 3' -57 NC_005284.1 + 9499 0.72 0.277981
Target:  5'- gGCGGCGacaGCGUGGGUCGGcgcCCGGCgAg -3'
miRNA:   3'- aCGCCGCg--UGCGCCUAGUU---GGUUGgU- -5'
24843 3' -57 NC_005284.1 + 53333 0.71 0.338475
Target:  5'- aGCGGaCGCACuGCGGcuGUCGcuucGCCAGCgCAg -3'
miRNA:   3'- aCGCC-GCGUG-CGCC--UAGU----UGGUUG-GU- -5'
24843 3' -57 NC_005284.1 + 27677 0.7 0.355019
Target:  5'- gGcCGGCGUggcGCGCGGGUC-GCCGcuGCCu -3'
miRNA:   3'- aC-GCCGCG---UGCGCCUAGuUGGU--UGGu -5'
24843 3' -57 NC_005284.1 + 50116 0.7 0.355019
Target:  5'- cGCGGCgaucgcGCACGCGGcGUUcGCCAuggACCGg -3'
miRNA:   3'- aCGCCG------CGUGCGCC-UAGuUGGU---UGGU- -5'
24843 3' -57 NC_005284.1 + 50484 0.7 0.372125
Target:  5'- uUGCGucGCGUgucacGCGUGGAUCGAUCAgaACCGg -3'
miRNA:   3'- -ACGC--CGCG-----UGCGCCUAGUUGGU--UGGU- -5'
24843 3' -57 NC_005284.1 + 45442 0.7 0.380887
Target:  5'- cGCGGCGU-CGCGauuGUCGGgCGACCAg -3'
miRNA:   3'- aCGCCGCGuGCGCc--UAGUUgGUUGGU- -5'
24843 3' -57 NC_005284.1 + 14273 0.69 0.417279
Target:  5'- aUGCGGCGUuacaggACGCGG-UCAAgCGgauuGCCGa -3'
miRNA:   3'- -ACGCCGCG------UGCGCCuAGUUgGU----UGGU- -5'
24843 3' -57 NC_005284.1 + 34851 0.69 0.436253
Target:  5'- cGCacaGGCGCACGauugGGAUCGGCuCGACa- -3'
miRNA:   3'- aCG---CCGCGUGCg---CCUAGUUG-GUUGgu -5'
24843 3' -57 NC_005284.1 + 22757 0.68 0.465619
Target:  5'- cUGCGGUcgaucaagggGCGCGCGaucGUCAGCCucaacGACCAu -3'
miRNA:   3'- -ACGCCG----------CGUGCGCc--UAGUUGG-----UUGGU- -5'
24843 3' -57 NC_005284.1 + 8655 0.68 0.475634
Target:  5'- gGCgGGCGCACaGCGGAUgCGGCguuuGCCu -3'
miRNA:   3'- aCG-CCGCGUG-CGCCUA-GUUGgu--UGGu -5'
24843 3' -57 NC_005284.1 + 34254 0.68 0.495978
Target:  5'- cUGCGGCGUAacUGCGcGcgCAGCCAGuuUCAg -3'
miRNA:   3'- -ACGCCGCGU--GCGC-CuaGUUGGUU--GGU- -5'
24843 3' -57 NC_005284.1 + 50276 0.67 0.527201
Target:  5'- --aGGCGaucgugaaGCGGAUCAagcgGCCGACCGu -3'
miRNA:   3'- acgCCGCgug-----CGCCUAGU----UGGUUGGU- -5'
24843 3' -57 NC_005284.1 + 11177 0.67 0.527201
Target:  5'- cGCGGCcgccGCGCGCGGAa-AGCaAGCCu -3'
miRNA:   3'- aCGCCG----CGUGCGCCUagUUGgUUGGu -5'
24843 3' -57 NC_005284.1 + 51749 0.67 0.527201
Target:  5'- cGCGGCGCGCcuGCGGGaaguggaggcgUUAGCgguaGGCCGg -3'
miRNA:   3'- aCGCCGCGUG--CGCCU-----------AGUUGg---UUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.