Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24843 | 3' | -57 | NC_005284.1 | + | 34851 | 0.69 | 0.436253 |
Target: 5'- cGCacaGGCGCACGauugGGAUCGGCuCGACa- -3' miRNA: 3'- aCG---CCGCGUGCg---CCUAGUUG-GUUGgu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 3742 | 0.67 | 0.531421 |
Target: 5'- cUGUGGCaGCACGaCuccuauacgccgaucGGAUCAuggGCCGGCCu -3' miRNA: 3'- -ACGCCG-CGUGC-G---------------CCUAGU---UGGUUGGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 51749 | 0.67 | 0.527201 |
Target: 5'- cGCGGCGCGCcuGCGGGaaguggaggcgUUAGCgguaGGCCGg -3' miRNA: 3'- aCGCCGCGUG--CGCCU-----------AGUUGg---UUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 11177 | 0.67 | 0.527201 |
Target: 5'- cGCGGCcgccGCGCGCGGAa-AGCaAGCCu -3' miRNA: 3'- aCGCCG----CGUGCGCCUagUUGgUUGGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 50276 | 0.67 | 0.527201 |
Target: 5'- --aGGCGaucgugaaGCGGAUCAagcgGCCGACCGu -3' miRNA: 3'- acgCCGCgug-----CGCCUAGU----UGGUUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 34254 | 0.68 | 0.495978 |
Target: 5'- cUGCGGCGUAacUGCGcGcgCAGCCAGuuUCAg -3' miRNA: 3'- -ACGCCGCGU--GCGC-CuaGUUGGUU--GGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 8655 | 0.68 | 0.475634 |
Target: 5'- gGCgGGCGCACaGCGGAUgCGGCguuuGCCu -3' miRNA: 3'- aCG-CCGCGUG-CGCCUA-GUUGgu--UGGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 22757 | 0.68 | 0.465619 |
Target: 5'- cUGCGGUcgaucaagggGCGCGCGaucGUCAGCCucaacGACCAu -3' miRNA: 3'- -ACGCCG----------CGUGCGCc--UAGUUGG-----UUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 6845 | 0.68 | 0.465619 |
Target: 5'- -uUGGCGCGCGCG-AUCGAUCGugUg -3' miRNA: 3'- acGCCGCGUGCGCcUAGUUGGUugGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 15271 | 0.69 | 0.445924 |
Target: 5'- -cCGGCGCAU-CGGcaCAGCCGACCGa -3' miRNA: 3'- acGCCGCGUGcGCCuaGUUGGUUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 16756 | 0.69 | 0.445924 |
Target: 5'- cUGCGGUGCGCGUGcgcuucGGUguGCCGGCg- -3' miRNA: 3'- -ACGCCGCGUGCGC------CUAguUGGUUGgu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 47785 | 0.75 | 0.183202 |
Target: 5'- gGCGGCGCuCGCGGAggCGACgGGCgAg -3' miRNA: 3'- aCGCCGCGuGCGCCUa-GUUGgUUGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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