Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24843 | 3' | -57 | NC_005284.1 | + | 34254 | 0.68 | 0.495978 |
Target: 5'- cUGCGGCGUAacUGCGcGcgCAGCCAGuuUCAg -3' miRNA: 3'- -ACGCCGCGU--GCGC-CuaGUUGGUU--GGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 45442 | 0.7 | 0.380887 |
Target: 5'- cGCGGCGU-CGCGauuGUCGGgCGACCAg -3' miRNA: 3'- aCGCCGCGuGCGCc--UAGUUgGUUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 14273 | 0.69 | 0.417279 |
Target: 5'- aUGCGGCGUuacaggACGCGG-UCAAgCGgauuGCCGa -3' miRNA: 3'- -ACGCCGCG------UGCGCCuAGUUgGU----UGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 34851 | 0.69 | 0.436253 |
Target: 5'- cGCacaGGCGCACGauugGGAUCGGCuCGACa- -3' miRNA: 3'- aCG---CCGCGUGCg---CCUAGUUG-GUUGgu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 16756 | 0.69 | 0.445924 |
Target: 5'- cUGCGGUGCGCGUGcgcuucGGUguGCCGGCg- -3' miRNA: 3'- -ACGCCGCGUGCGC------CUAguUGGUUGgu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 15271 | 0.69 | 0.445924 |
Target: 5'- -cCGGCGCAU-CGGcaCAGCCGACCGa -3' miRNA: 3'- acGCCGCGUGcGCCuaGUUGGUUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 6845 | 0.68 | 0.465619 |
Target: 5'- -uUGGCGCGCGCG-AUCGAUCGugUg -3' miRNA: 3'- acGCCGCGUGCGCcUAGUUGGUugGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 22757 | 0.68 | 0.465619 |
Target: 5'- cUGCGGUcgaucaagggGCGCGCGaucGUCAGCCucaacGACCAu -3' miRNA: 3'- -ACGCCG----------CGUGCGCc--UAGUUGG-----UUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 8655 | 0.68 | 0.475634 |
Target: 5'- gGCgGGCGCACaGCGGAUgCGGCguuuGCCu -3' miRNA: 3'- aCG-CCGCGUG-CGCCUA-GUUGgu--UGGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 50484 | 0.7 | 0.372125 |
Target: 5'- uUGCGucGCGUgucacGCGUGGAUCGAUCAgaACCGg -3' miRNA: 3'- -ACGC--CGCG-----UGCGCCUAGUUGGU--UGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 50116 | 0.7 | 0.355019 |
Target: 5'- cGCGGCgaucgcGCACGCGGcGUUcGCCAuggACCGg -3' miRNA: 3'- aCGCCG------CGUGCGCC-UAGuUGGU---UGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 27677 | 0.7 | 0.355019 |
Target: 5'- gGcCGGCGUggcGCGCGGGUC-GCCGcuGCCu -3' miRNA: 3'- aC-GCCGCG---UGCGCCUAGuUGGU--UGGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 40482 | 0.74 | 0.198485 |
Target: 5'- gUGUGGCGaagACGCGGAUCAGCCu---- -3' miRNA: 3'- -ACGCCGCg--UGCGCCUAGUUGGuuggu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 19407 | 0.74 | 0.203821 |
Target: 5'- gGCGGUGCAgGCGuGAUCGGCgcGCCGu -3' miRNA: 3'- aCGCCGCGUgCGC-CUAGUUGguUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 18929 | 0.74 | 0.209281 |
Target: 5'- aGCuGCGCGCGCcGAUCGACCuAAUCAc -3' miRNA: 3'- aCGcCGCGUGCGcCUAGUUGG-UUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 9499 | 0.72 | 0.277981 |
Target: 5'- gGCGGCGacaGCGUGGGUCGGcgcCCGGCgAg -3' miRNA: 3'- aCGCCGCg--UGCGCCUAGUU---GGUUGgU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 31447 | 0.71 | 0.30709 |
Target: 5'- cUGCGGCGCGC-CGGGccccCAAUUGACCGc -3' miRNA: 3'- -ACGCCGCGUGcGCCUa---GUUGGUUGGU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 53333 | 0.71 | 0.338475 |
Target: 5'- aGCGGaCGCACuGCGGcuGUCGcuucGCCAGCgCAg -3' miRNA: 3'- aCGCC-GCGUG-CGCC--UAGU----UGGUUG-GU- -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 31049 | 0.71 | 0.346676 |
Target: 5'- aUGUGGaa-GCGCaGGUCAACCGACCc -3' miRNA: 3'- -ACGCCgcgUGCGcCUAGUUGGUUGGu -5' |
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24843 | 3' | -57 | NC_005284.1 | + | 27091 | 0.7 | 0.352501 |
Target: 5'- aGCGGCGCcccauacucgagcaACGaCGGAUCAauugcgcguGCCcGCCGc -3' miRNA: 3'- aCGCCGCG--------------UGC-GCCUAGU---------UGGuUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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