miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24844 5' -57.3 NC_005284.1 + 18014 0.66 0.615949
Target:  5'- --aGUCGGuCGACGGCGA-CACg-GUCa -3'
miRNA:   3'- accCAGCC-GUUGCCGCUaGUGgaCAG- -5'
24844 5' -57.3 NC_005284.1 + 27675 0.66 0.605079
Target:  5'- cGGGcCGGCGugGcGCGcggGUCGCCg--- -3'
miRNA:   3'- aCCCaGCCGUugC-CGC---UAGUGGacag -5'
24844 5' -57.3 NC_005284.1 + 22295 0.66 0.569416
Target:  5'- aGGGUCGaGgugaucaacgauauCAACGGCGAgcuggugaACCUGUa -3'
miRNA:   3'- aCCCAGC-C--------------GUUGCCGCUag------UGGACAg -5'
24844 5' -57.3 NC_005284.1 + 33133 0.67 0.551239
Target:  5'- cGcGG-CGGCAucgugcGCGGCGAUCGCacgCUGcUCg -3'
miRNA:   3'- aC-CCaGCCGU------UGCCGCUAGUG---GAC-AG- -5'
24844 5' -57.3 NC_005284.1 + 7660 0.67 0.519622
Target:  5'- cGGGUCcGUGACGaGCGucaGCUUGUCg -3'
miRNA:   3'- aCCCAGcCGUUGC-CGCuagUGGACAG- -5'
24844 5' -57.3 NC_005284.1 + 7505 0.68 0.457772
Target:  5'- cGGGcgaauucUCGGuCGACGGCaAUUACCaGUCg -3'
miRNA:   3'- aCCC-------AGCC-GUUGCCGcUAGUGGaCAG- -5'
24844 5' -57.3 NC_005284.1 + 53578 0.68 0.448977
Target:  5'- cUGGGggcgugCGGCugUGGCGGUCAUCgaGUUc -3'
miRNA:   3'- -ACCCa-----GCCGuuGCCGCUAGUGGa-CAG- -5'
24844 5' -57.3 NC_005284.1 + 8345 0.7 0.366569
Target:  5'- cGGcauUCGGCGACGGCGAUCGgUUcGUUc -3'
miRNA:   3'- aCCc--AGCCGUUGCCGCUAGUgGA-CAG- -5'
24844 5' -57.3 NC_005284.1 + 19638 0.71 0.325505
Target:  5'- cGGGUguacgaCGGCAACGGCGugcuUCGCgUG-Cg -3'
miRNA:   3'- aCCCA------GCCGUUGCCGCu---AGUGgACaG- -5'
24844 5' -57.3 NC_005284.1 + 19014 0.71 0.3033
Target:  5'- gUGuGGUCGcuGCAgGCGGCGAUCGCCgagggcgauauggcgGUCg -3'
miRNA:   3'- -AC-CCAGC--CGU-UGCCGCUAGUGGa--------------CAG- -5'
24844 5' -57.3 NC_005284.1 + 4635 0.74 0.219767
Target:  5'- -cGGUCGGCAGCGGCGugagcggcagcaacUCGCUgGUCg -3'
miRNA:   3'- acCCAGCCGUUGCCGCu-------------AGUGGaCAG- -5'
24844 5' -57.3 NC_005284.1 + 9511 0.78 0.110425
Target:  5'- gUGGGUCGGCGccCGGCGAgCGCUcGUCg -3'
miRNA:   3'- -ACCCAGCCGUu-GCCGCUaGUGGaCAG- -5'
24844 5' -57.3 NC_005284.1 + 36939 1.08 0.000678
Target:  5'- uUGGGUCGGCAACGGCGAUCACCUGUCc -3'
miRNA:   3'- -ACCCAGCCGUUGCCGCUAGUGGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.