miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24845 3' -49.7 NC_005284.1 + 19257 0.65 0.966888
Target:  5'- cGCGUCGCGgcgucguaucaGAUCaagGUGcAGACGAccgUCg -3'
miRNA:   3'- -CGCAGCGCaa---------CUAG---CACaUCUGCU---AG- -5'
24845 3' -49.7 NC_005284.1 + 45172 0.66 0.964027
Target:  5'- aCGUCGgGcaggaGAUCGUGaAGACGcUCg -3'
miRNA:   3'- cGCAGCgCaa---CUAGCACaUCUGCuAG- -5'
24845 3' -49.7 NC_005284.1 + 18437 0.66 0.964027
Target:  5'- uCGUCGCGgccggcgcGAUCGaGaAGGCGAUUg -3'
miRNA:   3'- cGCAGCGCaa------CUAGCaCaUCUGCUAG- -5'
24845 3' -49.7 NC_005284.1 + 6849 0.66 0.956131
Target:  5'- cGCG-CGCGaucGAUCGUGUGcucggagggcGGCGGUg -3'
miRNA:   3'- -CGCaGCGCaa-CUAGCACAU----------CUGCUAg -5'
24845 3' -49.7 NC_005284.1 + 7497 0.67 0.942207
Target:  5'- cGCG-CGCGUUGAUCacgcGgcGACGGccgUCg -3'
miRNA:   3'- -CGCaGCGCAACUAGca--CauCUGCU---AG- -5'
24845 3' -49.7 NC_005284.1 + 14434 0.67 0.936455
Target:  5'- uGCaGUCGaCGUcGAUCGUGUGGcaagggaACGAg- -3'
miRNA:   3'- -CG-CAGC-GCAaCUAGCACAUC-------UGCUag -5'
24845 3' -49.7 NC_005284.1 + 912 0.67 0.931487
Target:  5'- cGCGg-GCGUUGGcaucggcauguUCGUGcUGGACGAc- -3'
miRNA:   3'- -CGCagCGCAACU-----------AGCAC-AUCUGCUag -5'
24845 3' -49.7 NC_005284.1 + 11581 0.68 0.89959
Target:  5'- --uUCGCGgcGAUCGUuaGUGGACG-UCu -3'
miRNA:   3'- cgcAGCGCaaCUAGCA--CAUCUGCuAG- -5'
24845 3' -49.7 NC_005284.1 + 29658 0.69 0.867325
Target:  5'- aCGUCGCuUUGAaccagucagcuuguuUCGUGUAucgcuuuuugccgguGACGAUCg -3'
miRNA:   3'- cGCAGCGcAACU---------------AGCACAU---------------CUGCUAG- -5'
24845 3' -49.7 NC_005284.1 + 37108 0.7 0.834202
Target:  5'- gGCGUCGCGcacGAUCGcgcgcagGUAGACGc-- -3'
miRNA:   3'- -CGCAGCGCaa-CUAGCa------CAUCUGCuag -5'
24845 3' -49.7 NC_005284.1 + 50485 0.74 0.610054
Target:  5'- uGCGUCGCGUgucaCGcGUGGAuCGAUCa -3'
miRNA:   3'- -CGCAGCGCAacuaGCaCAUCU-GCUAG- -5'
24845 3' -49.7 NC_005284.1 + 37774 0.75 0.542966
Target:  5'- cGCcUCGaCGUUGAUCGcGUcGGCGAUCg -3'
miRNA:   3'- -CGcAGC-GCAACUAGCaCAuCUGCUAG- -5'
24845 3' -49.7 NC_005284.1 + 36627 1.12 0.002637
Target:  5'- uGCGUCGCGUUGAUCGUGUAGACGAUCu -3'
miRNA:   3'- -CGCAGCGCAACUAGCACAUCUGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.