Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24845 | 3' | -49.7 | NC_005284.1 | + | 36627 | 1.12 | 0.002637 |
Target: 5'- uGCGUCGCGUUGAUCGUGUAGACGAUCu -3' miRNA: 3'- -CGCAGCGCAACUAGCACAUCUGCUAG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 37774 | 0.75 | 0.542966 |
Target: 5'- cGCcUCGaCGUUGAUCGcGUcGGCGAUCg -3' miRNA: 3'- -CGcAGC-GCAACUAGCaCAuCUGCUAG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 11581 | 0.68 | 0.89959 |
Target: 5'- --uUCGCGgcGAUCGUuaGUGGACG-UCu -3' miRNA: 3'- cgcAGCGCaaCUAGCA--CAUCUGCuAG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 7497 | 0.67 | 0.942207 |
Target: 5'- cGCG-CGCGUUGAUCacgcGgcGACGGccgUCg -3' miRNA: 3'- -CGCaGCGCAACUAGca--CauCUGCU---AG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 18437 | 0.66 | 0.964027 |
Target: 5'- uCGUCGCGgccggcgcGAUCGaGaAGGCGAUUg -3' miRNA: 3'- cGCAGCGCaa------CUAGCaCaUCUGCUAG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 19257 | 0.65 | 0.966888 |
Target: 5'- cGCGUCGCGgcgucguaucaGAUCaagGUGcAGACGAccgUCg -3' miRNA: 3'- -CGCAGCGCaa---------CUAG---CACaUCUGCU---AG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 45172 | 0.66 | 0.964027 |
Target: 5'- aCGUCGgGcaggaGAUCGUGaAGACGcUCg -3' miRNA: 3'- cGCAGCgCaa---CUAGCACaUCUGCuAG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 6849 | 0.66 | 0.956131 |
Target: 5'- cGCG-CGCGaucGAUCGUGUGcucggagggcGGCGGUg -3' miRNA: 3'- -CGCaGCGCaa-CUAGCACAU----------CUGCUAg -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 14434 | 0.67 | 0.936455 |
Target: 5'- uGCaGUCGaCGUcGAUCGUGUGGcaagggaACGAg- -3' miRNA: 3'- -CG-CAGC-GCAaCUAGCACAUC-------UGCUag -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 912 | 0.67 | 0.931487 |
Target: 5'- cGCGg-GCGUUGGcaucggcauguUCGUGcUGGACGAc- -3' miRNA: 3'- -CGCagCGCAACU-----------AGCAC-AUCUGCUag -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 29658 | 0.69 | 0.867325 |
Target: 5'- aCGUCGCuUUGAaccagucagcuuguuUCGUGUAucgcuuuuugccgguGACGAUCg -3' miRNA: 3'- cGCAGCGcAACU---------------AGCACAU---------------CUGCUAG- -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 37108 | 0.7 | 0.834202 |
Target: 5'- gGCGUCGCGcacGAUCGcgcgcagGUAGACGc-- -3' miRNA: 3'- -CGCAGCGCaa-CUAGCa------CAUCUGCuag -5' |
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24845 | 3' | -49.7 | NC_005284.1 | + | 50485 | 0.74 | 0.610054 |
Target: 5'- uGCGUCGCGUgucaCGcGUGGAuCGAUCa -3' miRNA: 3'- -CGCAGCGCAacuaGCaCAUCU-GCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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