Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24845 | 5' | -53.3 | NC_005284.1 | + | 33351 | 0.69 | 0.650905 |
Target: 5'- cCGCUcacaaaUUGCGCGUUCAgUAGCGCGg -3' miRNA: 3'- aGCGAaag---GACGUGCGAGU-GUUGCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 12762 | 0.66 | 0.828907 |
Target: 5'- cCGCUcggCCgGCacGCGCUCGCGaagauACGCu -3' miRNA: 3'- aGCGAaa-GGaCG--UGCGAGUGU-----UGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 44121 | 0.66 | 0.798449 |
Target: 5'- aUCGCgc-CCgcgGCGCGCaccaguuccucgCGCAGCGCu -3' miRNA: 3'- -AGCGaaaGGa--CGUGCGa-----------GUGUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 50165 | 0.67 | 0.770276 |
Target: 5'- cCGCUgccgaCCgucgcagGCACGUUCAUGAUGCu -3' miRNA: 3'- aGCGAaa---GGa------CGUGCGAGUGUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 23449 | 0.67 | 0.770276 |
Target: 5'- gCGCgugUUCUGCGCgucGCUCGcCGACGUu -3' miRNA: 3'- aGCGaa-AGGACGUG---CGAGU-GUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 43500 | 0.67 | 0.759921 |
Target: 5'- cUCGCUUUCCaGCGaaugaacacCGCcccccuUCGCcGCGCGa -3' miRNA: 3'- -AGCGAAAGGaCGU---------GCG------AGUGuUGCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 27216 | 0.67 | 0.759921 |
Target: 5'- uUCGCUUUUUcuaUGUuCGCUUucuGCAGCGCa -3' miRNA: 3'- -AGCGAAAGG---ACGuGCGAG---UGUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 45120 | 0.68 | 0.717266 |
Target: 5'- -gGCUUUCgC-GCAuCGCUCGCAugccCGCGa -3' miRNA: 3'- agCGAAAG-GaCGU-GCGAGUGUu---GCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 46062 | 0.68 | 0.717266 |
Target: 5'- uUCGCggaucgaaCUGCGCGC-CGCGucgaGCGCGc -3' miRNA: 3'- -AGCGaaag----GACGUGCGaGUGU----UGCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 43610 | 0.79 | 0.174225 |
Target: 5'- cUUGCUUUCC-GCGCGCggcggcCGCGGCGCGa -3' miRNA: 3'- -AGCGAAAGGaCGUGCGa-----GUGUUGCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 46100 | 0.76 | 0.26767 |
Target: 5'- cCGUga-CCUGCACGCUUGCGGCGUu -3' miRNA: 3'- aGCGaaaGGACGUGCGAGUGUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 28479 | 0.69 | 0.639717 |
Target: 5'- aUGCUUUCCgcucGCACGCgcCGCAGUGCc -3' miRNA: 3'- aGCGAAAGGa---CGUGCGa-GUGUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 36665 | 1.1 | 0.001261 |
Target: 5'- gUCGCUUUCCUGCACGCUCACAACGCGa -3' miRNA: 3'- -AGCGAAAGGACGUGCGAGUGUUGCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 44725 | 0.69 | 0.625162 |
Target: 5'- cCGCgcgUUCC-GCuCGCUCACGagccugcguggcaaGCGCGa -3' miRNA: 3'- aGCGa--AAGGaCGuGCGAGUGU--------------UGCGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 51473 | 0.72 | 0.435934 |
Target: 5'- cCGCUcggCCUGCACuaucgGCUCGCAACaGCc -3' miRNA: 3'- aGCGAaa-GGACGUG-----CGAGUGUUG-CGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 37129 | 0.68 | 0.673217 |
Target: 5'- gUCGUcgUCCUGCACggGCUCgACAGCuuGCu -3' miRNA: 3'- -AGCGaaAGGACGUG--CGAG-UGUUG--CGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 17673 | 0.71 | 0.53988 |
Target: 5'- gCGUcuaCCUGCGCGCgaucgugCGCGACGCc -3' miRNA: 3'- aGCGaaaGGACGUGCGa------GUGUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 45305 | 0.71 | 0.507634 |
Target: 5'- gUCGCcg-CCUGCGuCGC-CGCGACuGCGg -3' miRNA: 3'- -AGCGaaaGGACGU-GCGaGUGUUG-CGC- -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 53903 | 0.68 | 0.695368 |
Target: 5'- gUCGCUUgccuuggCCUGCGCGU--AgAGCGCu -3' miRNA: 3'- -AGCGAAa------GGACGUGCGagUgUUGCGc -5' |
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24845 | 5' | -53.3 | NC_005284.1 | + | 31678 | 0.66 | 0.828907 |
Target: 5'- cCGCUgcgCCa--GCGCUCACGuaguucaaGCGCGu -3' miRNA: 3'- aGCGAaa-GGacgUGCGAGUGU--------UGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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