miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24845 5' -53.3 NC_005284.1 + 30689 0.7 0.57279
Target:  5'- -gGCUUUCUUGCcgacGCGCUCuGCAuaauggACGCGu -3'
miRNA:   3'- agCGAAAGGACG----UGCGAG-UGU------UGCGC- -5'
24845 5' -53.3 NC_005284.1 + 32234 0.68 0.684318
Target:  5'- -aGCUUUCC-GCGCGUgaauccuuUCGCcuGCGCGa -3'
miRNA:   3'- agCGAAAGGaCGUGCG--------AGUGu-UGCGC- -5'
24845 5' -53.3 NC_005284.1 + 32052 0.68 0.695368
Target:  5'- cUCGUaagCCUGCACGCUguacuucggcUugAGCGUGu -3'
miRNA:   3'- -AGCGaaaGGACGUGCGA----------GugUUGCGC- -5'
24845 5' -53.3 NC_005284.1 + 53903 0.68 0.695368
Target:  5'- gUCGCUUgccuuggCCUGCGCGU--AgAGCGCu -3'
miRNA:   3'- -AGCGAAa------GGACGUGCGagUgUUGCGc -5'
24845 5' -53.3 NC_005284.1 + 6979 0.68 0.717266
Target:  5'- gUCGUga-CCgcguacaugGCGCGCUCgACAugGCGc -3'
miRNA:   3'- -AGCGaaaGGa--------CGUGCGAG-UGUugCGC- -5'
24845 5' -53.3 NC_005284.1 + 4460 0.67 0.770276
Target:  5'- cUGCUggaggCCgagcaaaaGCugGCUCGCGGCgGCGg -3'
miRNA:   3'- aGCGAaa---GGa-------CGugCGAGUGUUG-CGC- -5'
24845 5' -53.3 NC_005284.1 + 31797 0.66 0.790532
Target:  5'- gCGCggcUCCgGCugGCUCGgAugGgGg -3'
miRNA:   3'- aGCGaa-AGGaCGugCGAGUgUugCgC- -5'
24845 5' -53.3 NC_005284.1 + 9904 0.66 0.819608
Target:  5'- gCGCg--CCgaaGCGuCGCUCGCGcucGCGCa -3'
miRNA:   3'- aGCGaaaGGa--CGU-GCGAGUGU---UGCGc -5'
24845 5' -53.3 NC_005284.1 + 31678 0.66 0.828907
Target:  5'- cCGCUgcgCCa--GCGCUCACGuaguucaaGCGCGu -3'
miRNA:   3'- aGCGAaa-GGacgUGCGAGUGU--------UGCGC- -5'
24845 5' -53.3 NC_005284.1 + 38984 0.76 0.274687
Target:  5'- cCGCggg-CUGCGCGCUgGCGACGCa -3'
miRNA:   3'- aGCGaaagGACGUGCGAgUGUUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.