miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 3' -61.1 NC_005284.1 + 3905 0.66 0.445491
Target:  5'- gCGCCGAgCACGCCcgaaugccuauUGCGaugcacguaUGCCUUCGu -3'
miRNA:   3'- -GCGGCUaGUGCGG-----------ACGUg--------GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 40735 0.66 0.445491
Target:  5'- uCG-CGAUgACGCCaGCcuGCCGCCC-CGc -3'
miRNA:   3'- -GCgGCUAgUGCGGaCG--UGGCGGGaGC- -5'
24846 3' -61.1 NC_005284.1 + 48917 0.66 0.445491
Target:  5'- aGCCGAUUGCGUUgcgGCGCCGauguagaUCUUGa -3'
miRNA:   3'- gCGGCUAGUGCGGa--CGUGGCg------GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 11887 0.66 0.445491
Target:  5'- uCGCagGGUgCGCGCCUcucgGCAUCGUCCaUCGa -3'
miRNA:   3'- -GCGg-CUA-GUGCGGA----CGUGGCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 25072 0.66 0.445491
Target:  5'- aCGCCuGAUgACGCCg--GCCGaCCUCGc -3'
miRNA:   3'- -GCGG-CUAgUGCGGacgUGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 42386 0.66 0.445491
Target:  5'- cCGCCGuugCGCGCCgGCGaauccccuccucCCGCgCUCc -3'
miRNA:   3'- -GCGGCua-GUGCGGaCGU------------GGCGgGAGc -5'
24846 3' -61.1 NC_005284.1 + 39431 0.66 0.445491
Target:  5'- uGCCGAUCGagccaucgGCCUGCA-CGCCgagCGa -3'
miRNA:   3'- gCGGCUAGUg-------CGGACGUgGCGGga-GC- -5'
24846 3' -61.1 NC_005284.1 + 8748 0.66 0.445491
Target:  5'- uGCCG-UCGagGCCUGCucgaCGCCCggCGa -3'
miRNA:   3'- gCGGCuAGUg-CGGACGug--GCGGGa-GC- -5'
24846 3' -61.1 NC_005284.1 + 43998 0.66 0.436172
Target:  5'- cCGCCGGcgaagaaguuguUCGCGUCagaaaGCAgccgaaCGCCCUCGg -3'
miRNA:   3'- -GCGGCU------------AGUGCGGa----CGUg-----GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 33770 0.66 0.426966
Target:  5'- uGUCGAagUGCGCCgGCGCCGaCUUCGu -3'
miRNA:   3'- gCGGCUa-GUGCGGaCGUGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 46774 0.66 0.417877
Target:  5'- aGCCGcgCAuuCGCCUGCAugugcgcgUCGUCaCUCGc -3'
miRNA:   3'- gCGGCuaGU--GCGGACGU--------GGCGG-GAGC- -5'
24846 3' -61.1 NC_005284.1 + 7064 0.66 0.409798
Target:  5'- cCGCCGAgcacggccuucugcgCACGCgaGCGCgcgUGCCCUUc -3'
miRNA:   3'- -GCGGCUa--------------GUGCGgaCGUG---GCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 30950 0.66 0.408906
Target:  5'- cCGgCGAUCAC-CCaaUGUagGCCGCCgUCGg -3'
miRNA:   3'- -GCgGCUAGUGcGG--ACG--UGGCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 24907 0.66 0.408906
Target:  5'- uCGCCuugGAaCACGCCgGCGCCGaCCaUCGc -3'
miRNA:   3'- -GCGG---CUaGUGCGGaCGUGGC-GGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 7574 0.66 0.403582
Target:  5'- gGCuCGAgCACGcCCUGCacgcgguaguuucgaACCGUCUUCGg -3'
miRNA:   3'- gCG-GCUaGUGC-GGACG---------------UGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 5791 0.66 0.403582
Target:  5'- aCGCCGAUCguuucgcucgagguuGCGCUUGCACa-CCUgcgCGa -3'
miRNA:   3'- -GCGGCUAG---------------UGCGGACGUGgcGGGa--GC- -5'
24846 3' -61.1 NC_005284.1 + 31570 0.66 0.400057
Target:  5'- uGCuCGA-CACGgCUcCACCGCCCgUCGu -3'
miRNA:   3'- gCG-GCUaGUGCgGAcGUGGCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 33263 0.67 0.39133
Target:  5'- gCGCCGAUCaggugcucgACGCaaGCGCCGgCCg-- -3'
miRNA:   3'- -GCGGCUAG---------UGCGgaCGUGGCgGGagc -5'
24846 3' -61.1 NC_005284.1 + 8188 0.67 0.390465
Target:  5'- cCGCCGcUCGggacguucggcguUGCCcacUGCGCCGCCaugCUCGg -3'
miRNA:   3'- -GCGGCuAGU-------------GCGG---ACGUGGCGG---GAGC- -5'
24846 3' -61.1 NC_005284.1 + 19936 0.67 0.382729
Target:  5'- aGCCGAUCccaaucguGCGCCUGUggaCGCCaaCGa -3'
miRNA:   3'- gCGGCUAG--------UGCGGACGug-GCGGgaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.