Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24846 | 3' | -61.1 | NC_005284.1 | + | 31570 | 0.66 | 0.400057 |
Target: 5'- uGCuCGA-CACGgCUcCACCGCCCgUCGu -3' miRNA: 3'- gCG-GCUaGUGCgGAcGUGGCGGG-AGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 40735 | 0.66 | 0.445491 |
Target: 5'- uCG-CGAUgACGCCaGCcuGCCGCCC-CGc -3' miRNA: 3'- -GCgGCUAgUGCGGaCG--UGGCGGGaGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 39431 | 0.66 | 0.445491 |
Target: 5'- uGCCGAUCGagccaucgGCCUGCA-CGCCgagCGa -3' miRNA: 3'- gCGGCUAGUg-------CGGACGUgGCGGga-GC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 11887 | 0.66 | 0.445491 |
Target: 5'- uCGCagGGUgCGCGCCUcucgGCAUCGUCCaUCGa -3' miRNA: 3'- -GCGg-CUA-GUGCGGA----CGUGGCGGG-AGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 8748 | 0.66 | 0.445491 |
Target: 5'- uGCCG-UCGagGCCUGCucgaCGCCCggCGa -3' miRNA: 3'- gCGGCuAGUg-CGGACGug--GCGGGa-GC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 43998 | 0.66 | 0.436172 |
Target: 5'- cCGCCGGcgaagaaguuguUCGCGUCagaaaGCAgccgaaCGCCCUCGg -3' miRNA: 3'- -GCGGCU------------AGUGCGGa----CGUg-----GCGGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 46774 | 0.66 | 0.417877 |
Target: 5'- aGCCGcgCAuuCGCCUGCAugugcgcgUCGUCaCUCGc -3' miRNA: 3'- gCGGCuaGU--GCGGACGU--------GGCGG-GAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 7064 | 0.66 | 0.409798 |
Target: 5'- cCGCCGAgcacggccuucugcgCACGCgaGCGCgcgUGCCCUUc -3' miRNA: 3'- -GCGGCUa--------------GUGCGgaCGUG---GCGGGAGc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 24907 | 0.66 | 0.408906 |
Target: 5'- uCGCCuugGAaCACGCCgGCGCCGaCCaUCGc -3' miRNA: 3'- -GCGG---CUaGUGCGGaCGUGGC-GGgAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 48917 | 0.66 | 0.445491 |
Target: 5'- aGCCGAUUGCGUUgcgGCGCCGauguagaUCUUGa -3' miRNA: 3'- gCGGCUAGUGCGGa--CGUGGCg------GGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 3905 | 0.66 | 0.445491 |
Target: 5'- gCGCCGAgCACGCCcgaaugccuauUGCGaugcacguaUGCCUUCGu -3' miRNA: 3'- -GCGGCUaGUGCGG-----------ACGUg--------GCGGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 25072 | 0.66 | 0.445491 |
Target: 5'- aCGCCuGAUgACGCCg--GCCGaCCUCGc -3' miRNA: 3'- -GCGG-CUAgUGCGGacgUGGCgGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 7574 | 0.66 | 0.403582 |
Target: 5'- gGCuCGAgCACGcCCUGCacgcgguaguuucgaACCGUCUUCGg -3' miRNA: 3'- gCG-GCUaGUGC-GGACG---------------UGGCGGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 5791 | 0.66 | 0.403582 |
Target: 5'- aCGCCGAUCguuucgcucgagguuGCGCUUGCACa-CCUgcgCGa -3' miRNA: 3'- -GCGGCUAG---------------UGCGGACGUGgcGGGa--GC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 30950 | 0.66 | 0.408906 |
Target: 5'- cCGgCGAUCAC-CCaaUGUagGCCGCCgUCGg -3' miRNA: 3'- -GCgGCUAGUGcGG--ACG--UGGCGGgAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 33770 | 0.66 | 0.426966 |
Target: 5'- uGUCGAagUGCGCCgGCGCCGaCUUCGu -3' miRNA: 3'- gCGGCUa-GUGCGGaCGUGGCgGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 42386 | 0.66 | 0.445491 |
Target: 5'- cCGCCGuugCGCGCCgGCGaauccccuccucCCGCgCUCc -3' miRNA: 3'- -GCGGCua-GUGCGGaCGU------------GGCGgGAGc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 19936 | 0.67 | 0.382729 |
Target: 5'- aGCCGAUCccaaucguGCGCCUGUggaCGCCaaCGa -3' miRNA: 3'- gCGGCUAG--------UGCGGACGug-GCGGgaGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 8188 | 0.67 | 0.390465 |
Target: 5'- cCGCCGcUCGggacguucggcguUGCCcacUGCGCCGCCaugCUCGg -3' miRNA: 3'- -GCGGCuAGU-------------GCGG---ACGUGGCGG---GAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 33263 | 0.67 | 0.39133 |
Target: 5'- gCGCCGAUCaggugcucgACGCaaGCGCCGgCCg-- -3' miRNA: 3'- -GCGGCUAG---------UGCGgaCGUGGCgGGagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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