miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 3' -61.1 NC_005284.1 + 35383 1.08 0.000372
Target:  5'- gCGCCGAUCACGCCUGCACCGCCCUCGu -3'
miRNA:   3'- -GCGGCUAGUGCGGACGUGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 47916 0.73 0.157911
Target:  5'- --aCGAUCACGCUcacCGCCGCCCUCc -3'
miRNA:   3'- gcgGCUAGUGCGGac-GUGGCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 44116 0.72 0.184644
Target:  5'- uGUCGAUCGCGCCcGCGgCGCgcaccaguuCCUCGc -3'
miRNA:   3'- gCGGCUAGUGCGGaCGUgGCG---------GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 24402 0.72 0.18947
Target:  5'- uGCCGAccagCACacgcggGCCgagcGCAUCGCCCUCGc -3'
miRNA:   3'- gCGGCUa---GUG------CGGa---CGUGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 31497 0.72 0.18947
Target:  5'- aCGCCGGgauaCACGCCgauaucgGCACCGCgcgCCUUa -3'
miRNA:   3'- -GCGGCUa---GUGCGGa------CGUGGCG---GGAGc -5'
24846 3' -61.1 NC_005284.1 + 45228 0.71 0.194407
Target:  5'- uGgCGAgCGCuGCCUGCGCCG-CCUCGu -3'
miRNA:   3'- gCgGCUaGUG-CGGACGUGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 29125 0.71 0.199457
Target:  5'- uCGCgCGA--ACGgCUGCGCCGCCUUCc -3'
miRNA:   3'- -GCG-GCUagUGCgGACGUGGCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 9153 0.71 0.212043
Target:  5'- aGCCGcca--GCCUgccccgcgaagacucGCACCGCCCUCGu -3'
miRNA:   3'- gCGGCuagugCGGA---------------CGUGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 18695 0.7 0.244077
Target:  5'- aGCUGcUCGCGCCcGCACCggacgaaaucaaGCUCUCGc -3'
miRNA:   3'- gCGGCuAGUGCGGaCGUGG------------CGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 6970 0.7 0.244077
Target:  5'- uGCCGAgcacccaucgCGCGCCgccaaGCGCuCGCCCgUCGc -3'
miRNA:   3'- gCGGCUa---------GUGCGGa----CGUG-GCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 33431 0.7 0.250204
Target:  5'- aCGUCGuugCACGCCUGCGCgGUagUCGa -3'
miRNA:   3'- -GCGGCua-GUGCGGACGUGgCGggAGC- -5'
24846 3' -61.1 NC_005284.1 + 18239 0.7 0.256458
Target:  5'- gGCCGAUCAcgaucguucCGCCaucggUGCagccGCCGCCgUCGa -3'
miRNA:   3'- gCGGCUAGU---------GCGG-----ACG----UGGCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 45012 0.7 0.256458
Target:  5'- gCGCCGuugCGacgugaGCUUGCGCCGUcgCCUCGa -3'
miRNA:   3'- -GCGGCua-GUg-----CGGACGUGGCG--GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 42978 0.69 0.262839
Target:  5'- gCGCuCGcgCGCGaCCUGCuCCG-CCUCGg -3'
miRNA:   3'- -GCG-GCuaGUGC-GGACGuGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 51470 0.69 0.267382
Target:  5'- aCGCCGcUCG-GCCUGCACUaucggcucgcaacaGCCCUuCGa -3'
miRNA:   3'- -GCGGCuAGUgCGGACGUGG--------------CGGGA-GC- -5'
24846 3' -61.1 NC_005284.1 + 54375 0.69 0.269348
Target:  5'- gCGCCGAaacuCGCCauuUGCGCCGCCgCUUc -3'
miRNA:   3'- -GCGGCUagu-GCGG---ACGUGGCGG-GAGc -5'
24846 3' -61.1 NC_005284.1 + 26896 0.69 0.275317
Target:  5'- uCGCCGGgcUUAUGCaUGCGCgacaugaugggauCGCCCUCGg -3'
miRNA:   3'- -GCGGCU--AGUGCGgACGUG-------------GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 46133 0.69 0.275987
Target:  5'- aCGCCGcAUC-CGCUgUGCGcCCGCCgUCGc -3'
miRNA:   3'- -GCGGC-UAGuGCGG-ACGU-GGCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 33798 0.69 0.275987
Target:  5'- aGUCGAUCGCGCCguucGUaAUCGCCCg-- -3'
miRNA:   3'- gCGGCUAGUGCGGa---CG-UGGCGGGagc -5'
24846 3' -61.1 NC_005284.1 + 53456 0.69 0.275987
Target:  5'- aGCCGAaaagcUCGuCGUCUgGCACCGuCCCUuCGa -3'
miRNA:   3'- gCGGCU-----AGU-GCGGA-CGUGGC-GGGA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.