miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 3' -61.1 NC_005284.1 + 35482 0.69 0.275987
Target:  5'- aCGCCGAUCgAUGCCaUGUACuugCGUCCgUCGa -3'
miRNA:   3'- -GCGGCUAG-UGCGG-ACGUG---GCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 50154 0.69 0.282756
Target:  5'- uGCCGcUCACGCC-GCuGCCGaCCgUCGc -3'
miRNA:   3'- gCGGCuAGUGCGGaCG-UGGC-GGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 45290 0.69 0.296687
Target:  5'- gCGCCGAccCACGCUguCGCCGCCUgcgUCGc -3'
miRNA:   3'- -GCGGCUa-GUGCGGacGUGGCGGG---AGC- -5'
24846 3' -61.1 NC_005284.1 + 5457 0.68 0.303127
Target:  5'- uCGUCGcgCACGCgUGCcgugccaaccaucGCCGuaCCCUCGg -3'
miRNA:   3'- -GCGGCuaGUGCGgACG-------------UGGC--GGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 36286 0.68 0.303849
Target:  5'- aCGCCGGaaucgacgUCACGCCgaGCG-CGUUCUCGg -3'
miRNA:   3'- -GCGGCU--------AGUGCGGa-CGUgGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 43222 0.68 0.311145
Target:  5'- gCGUCGAUCuGCGCaCUGCGCU-CCUUCa -3'
miRNA:   3'- -GCGGCUAG-UGCG-GACGUGGcGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 24950 0.68 0.311145
Target:  5'- gCGCCGAUCAUGCgCUccGCGUCuCCCUUGg -3'
miRNA:   3'- -GCGGCUAGUGCG-GA--CGUGGcGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 42928 0.68 0.3141
Target:  5'- aCGCCGA-CGCGCCaGUcggccugcaacgcgaGCCGCUgCUCGa -3'
miRNA:   3'- -GCGGCUaGUGCGGaCG---------------UGGCGG-GAGC- -5'
24846 3' -61.1 NC_005284.1 + 36838 0.68 0.333824
Target:  5'- uGgCGAUCGCGaCUUGCuuuGCCGCguccgCCUCGg -3'
miRNA:   3'- gCgGCUAGUGC-GGACG---UGGCG-----GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 43859 0.68 0.341648
Target:  5'- gGCCGGccaugCGgGCCUGCGCaucauucgCGCCCUUc -3'
miRNA:   3'- gCGGCUa----GUgCGGACGUG--------GCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 7502 0.67 0.349604
Target:  5'- gCGuuGAUCACGCg-GCgACgGCCgUCGa -3'
miRNA:   3'- -GCggCUAGUGCGgaCG-UGgCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 42321 0.67 0.349604
Target:  5'- cCG-CGAUCAgGCUcGCGggguucgacgauCCGCCCUCGa -3'
miRNA:   3'- -GCgGCUAGUgCGGaCGU------------GGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 46900 0.67 0.365081
Target:  5'- uCGCCGAcgucggcUCGCGCaCUGCGaucuuuUCGCCaCUCc -3'
miRNA:   3'- -GCGGCU-------AGUGCG-GACGU------GGCGG-GAGc -5'
24846 3' -61.1 NC_005284.1 + 37052 0.67 0.374255
Target:  5'- aGCCGGU-GCGCCUGCGCCuGCg---- -3'
miRNA:   3'- gCGGCUAgUGCGGACGUGG-CGggagc -5'
24846 3' -61.1 NC_005284.1 + 19936 0.67 0.382729
Target:  5'- aGCCGAUCccaaucguGCGCCUGUggaCGCCaaCGa -3'
miRNA:   3'- gCGGCUAG--------UGCGGACGug-GCGGgaGC- -5'
24846 3' -61.1 NC_005284.1 + 8188 0.67 0.390465
Target:  5'- cCGCCGcUCGggacguucggcguUGCCcacUGCGCCGCCaugCUCGg -3'
miRNA:   3'- -GCGGCuAGU-------------GCGG---ACGUGGCGG---GAGC- -5'
24846 3' -61.1 NC_005284.1 + 33263 0.67 0.39133
Target:  5'- gCGCCGAUCaggugcucgACGCaaGCGCCGgCCg-- -3'
miRNA:   3'- -GCGGCUAG---------UGCGgaCGUGGCgGGagc -5'
24846 3' -61.1 NC_005284.1 + 31570 0.66 0.400057
Target:  5'- uGCuCGA-CACGgCUcCACCGCCCgUCGu -3'
miRNA:   3'- gCG-GCUaGUGCgGAcGUGGCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 5791 0.66 0.403582
Target:  5'- aCGCCGAUCguuucgcucgagguuGCGCUUGCACa-CCUgcgCGa -3'
miRNA:   3'- -GCGGCUAG---------------UGCGGACGUGgcGGGa--GC- -5'
24846 3' -61.1 NC_005284.1 + 7574 0.66 0.403582
Target:  5'- gGCuCGAgCACGcCCUGCacgcgguaguuucgaACCGUCUUCGg -3'
miRNA:   3'- gCG-GCUaGUGC-GGACG---------------UGGCGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.