miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 3' -61.1 NC_005284.1 + 37052 0.67 0.374255
Target:  5'- aGCCGGU-GCGCCUGCGCCuGCg---- -3'
miRNA:   3'- gCGGCUAgUGCGGACGUGG-CGggagc -5'
24846 3' -61.1 NC_005284.1 + 46900 0.67 0.365081
Target:  5'- uCGCCGAcgucggcUCGCGCaCUGCGaucuuuUCGCCaCUCc -3'
miRNA:   3'- -GCGGCU-------AGUGCG-GACGU------GGCGG-GAGc -5'
24846 3' -61.1 NC_005284.1 + 42321 0.67 0.349604
Target:  5'- cCG-CGAUCAgGCUcGCGggguucgacgauCCGCCCUCGa -3'
miRNA:   3'- -GCgGCUAGUgCGGaCGU------------GGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 7502 0.67 0.349604
Target:  5'- gCGuuGAUCACGCg-GCgACgGCCgUCGa -3'
miRNA:   3'- -GCggCUAGUGCGgaCG-UGgCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 43859 0.68 0.341648
Target:  5'- gGCCGGccaugCGgGCCUGCGCaucauucgCGCCCUUc -3'
miRNA:   3'- gCGGCUa----GUgCGGACGUG--------GCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 36838 0.68 0.333824
Target:  5'- uGgCGAUCGCGaCUUGCuuuGCCGCguccgCCUCGg -3'
miRNA:   3'- gCgGCUAGUGC-GGACG---UGGCG-----GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 42928 0.68 0.3141
Target:  5'- aCGCCGA-CGCGCCaGUcggccugcaacgcgaGCCGCUgCUCGa -3'
miRNA:   3'- -GCGGCUaGUGCGGaCG---------------UGGCGG-GAGC- -5'
24846 3' -61.1 NC_005284.1 + 43222 0.68 0.311145
Target:  5'- gCGUCGAUCuGCGCaCUGCGCU-CCUUCa -3'
miRNA:   3'- -GCGGCUAG-UGCG-GACGUGGcGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 24950 0.68 0.311145
Target:  5'- gCGCCGAUCAUGCgCUccGCGUCuCCCUUGg -3'
miRNA:   3'- -GCGGCUAGUGCG-GA--CGUGGcGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 36286 0.68 0.303849
Target:  5'- aCGCCGGaaucgacgUCACGCCgaGCG-CGUUCUCGg -3'
miRNA:   3'- -GCGGCU--------AGUGCGGa-CGUgGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 5457 0.68 0.303127
Target:  5'- uCGUCGcgCACGCgUGCcgugccaaccaucGCCGuaCCCUCGg -3'
miRNA:   3'- -GCGGCuaGUGCGgACG-------------UGGC--GGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 45290 0.69 0.296687
Target:  5'- gCGCCGAccCACGCUguCGCCGCCUgcgUCGc -3'
miRNA:   3'- -GCGGCUa-GUGCGGacGUGGCGGG---AGC- -5'
24846 3' -61.1 NC_005284.1 + 50154 0.69 0.282756
Target:  5'- uGCCGcUCACGCC-GCuGCCGaCCgUCGc -3'
miRNA:   3'- gCGGCuAGUGCGGaCG-UGGC-GGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 46133 0.69 0.275987
Target:  5'- aCGCCGcAUC-CGCUgUGCGcCCGCCgUCGc -3'
miRNA:   3'- -GCGGC-UAGuGCGG-ACGU-GGCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 35482 0.69 0.275987
Target:  5'- aCGCCGAUCgAUGCCaUGUACuugCGUCCgUCGa -3'
miRNA:   3'- -GCGGCUAG-UGCGG-ACGUG---GCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 53456 0.69 0.275987
Target:  5'- aGCCGAaaagcUCGuCGUCUgGCACCGuCCCUuCGa -3'
miRNA:   3'- gCGGCU-----AGU-GCGGA-CGUGGC-GGGA-GC- -5'
24846 3' -61.1 NC_005284.1 + 33798 0.69 0.275987
Target:  5'- aGUCGAUCGCGCCguucGUaAUCGCCCg-- -3'
miRNA:   3'- gCGGCUAGUGCGGa---CG-UGGCGGGagc -5'
24846 3' -61.1 NC_005284.1 + 26896 0.69 0.275317
Target:  5'- uCGCCGGgcUUAUGCaUGCGCgacaugaugggauCGCCCUCGg -3'
miRNA:   3'- -GCGGCU--AGUGCGgACGUG-------------GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 54375 0.69 0.269348
Target:  5'- gCGCCGAaacuCGCCauuUGCGCCGCCgCUUc -3'
miRNA:   3'- -GCGGCUagu-GCGG---ACGUGGCGG-GAGc -5'
24846 3' -61.1 NC_005284.1 + 51470 0.69 0.267382
Target:  5'- aCGCCGcUCG-GCCUGCACUaucggcucgcaacaGCCCUuCGa -3'
miRNA:   3'- -GCGGCuAGUgCGGACGUGG--------------CGGGA-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.