miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 3' -61.1 NC_005284.1 + 3905 0.66 0.445491
Target:  5'- gCGCCGAgCACGCCcgaaugccuauUGCGaugcacguaUGCCUUCGu -3'
miRNA:   3'- -GCGGCUaGUGCGG-----------ACGUg--------GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 5457 0.68 0.303127
Target:  5'- uCGUCGcgCACGCgUGCcgugccaaccaucGCCGuaCCCUCGg -3'
miRNA:   3'- -GCGGCuaGUGCGgACG-------------UGGC--GGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 5791 0.66 0.403582
Target:  5'- aCGCCGAUCguuucgcucgagguuGCGCUUGCACa-CCUgcgCGa -3'
miRNA:   3'- -GCGGCUAG---------------UGCGGACGUGgcGGGa--GC- -5'
24846 3' -61.1 NC_005284.1 + 6970 0.7 0.244077
Target:  5'- uGCCGAgcacccaucgCGCGCCgccaaGCGCuCGCCCgUCGc -3'
miRNA:   3'- gCGGCUa---------GUGCGGa----CGUG-GCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 7064 0.66 0.409798
Target:  5'- cCGCCGAgcacggccuucugcgCACGCgaGCGCgcgUGCCCUUc -3'
miRNA:   3'- -GCGGCUa--------------GUGCGgaCGUG---GCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 7502 0.67 0.349604
Target:  5'- gCGuuGAUCACGCg-GCgACgGCCgUCGa -3'
miRNA:   3'- -GCggCUAGUGCGgaCG-UGgCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 7574 0.66 0.403582
Target:  5'- gGCuCGAgCACGcCCUGCacgcgguaguuucgaACCGUCUUCGg -3'
miRNA:   3'- gCG-GCUaGUGC-GGACG---------------UGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 8188 0.67 0.390465
Target:  5'- cCGCCGcUCGggacguucggcguUGCCcacUGCGCCGCCaugCUCGg -3'
miRNA:   3'- -GCGGCuAGU-------------GCGG---ACGUGGCGG---GAGC- -5'
24846 3' -61.1 NC_005284.1 + 8748 0.66 0.445491
Target:  5'- uGCCG-UCGagGCCUGCucgaCGCCCggCGa -3'
miRNA:   3'- gCGGCuAGUg-CGGACGug--GCGGGa-GC- -5'
24846 3' -61.1 NC_005284.1 + 9153 0.71 0.212043
Target:  5'- aGCCGcca--GCCUgccccgcgaagacucGCACCGCCCUCGu -3'
miRNA:   3'- gCGGCuagugCGGA---------------CGUGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 11887 0.66 0.445491
Target:  5'- uCGCagGGUgCGCGCCUcucgGCAUCGUCCaUCGa -3'
miRNA:   3'- -GCGg-CUA-GUGCGGA----CGUGGCGGG-AGC- -5'
24846 3' -61.1 NC_005284.1 + 18239 0.7 0.256458
Target:  5'- gGCCGAUCAcgaucguucCGCCaucggUGCagccGCCGCCgUCGa -3'
miRNA:   3'- gCGGCUAGU---------GCGG-----ACG----UGGCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 18695 0.7 0.244077
Target:  5'- aGCUGcUCGCGCCcGCACCggacgaaaucaaGCUCUCGc -3'
miRNA:   3'- gCGGCuAGUGCGGaCGUGG------------CGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 19936 0.67 0.382729
Target:  5'- aGCCGAUCccaaucguGCGCCUGUggaCGCCaaCGa -3'
miRNA:   3'- gCGGCUAG--------UGCGGACGug-GCGGgaGC- -5'
24846 3' -61.1 NC_005284.1 + 24402 0.72 0.18947
Target:  5'- uGCCGAccagCACacgcggGCCgagcGCAUCGCCCUCGc -3'
miRNA:   3'- gCGGCUa---GUG------CGGa---CGUGGCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 24907 0.66 0.408906
Target:  5'- uCGCCuugGAaCACGCCgGCGCCGaCCaUCGc -3'
miRNA:   3'- -GCGG---CUaGUGCGGaCGUGGC-GGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 24950 0.68 0.311145
Target:  5'- gCGCCGAUCAUGCgCUccGCGUCuCCCUUGg -3'
miRNA:   3'- -GCGGCUAGUGCG-GA--CGUGGcGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 25072 0.66 0.445491
Target:  5'- aCGCCuGAUgACGCCg--GCCGaCCUCGc -3'
miRNA:   3'- -GCGG-CUAgUGCGGacgUGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 26896 0.69 0.275317
Target:  5'- uCGCCGGgcUUAUGCaUGCGCgacaugaugggauCGCCCUCGg -3'
miRNA:   3'- -GCGGCU--AGUGCGgACGUG-------------GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 29125 0.71 0.199457
Target:  5'- uCGCgCGA--ACGgCUGCGCCGCCUUCc -3'
miRNA:   3'- -GCG-GCUagUGCgGACGUGGCGGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.