Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24846 | 3' | -61.1 | NC_005284.1 | + | 30950 | 0.66 | 0.408906 |
Target: 5'- cCGgCGAUCAC-CCaaUGUagGCCGCCgUCGg -3' miRNA: 3'- -GCgGCUAGUGcGG--ACG--UGGCGGgAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 31497 | 0.72 | 0.18947 |
Target: 5'- aCGCCGGgauaCACGCCgauaucgGCACCGCgcgCCUUa -3' miRNA: 3'- -GCGGCUa---GUGCGGa------CGUGGCG---GGAGc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 31570 | 0.66 | 0.400057 |
Target: 5'- uGCuCGA-CACGgCUcCACCGCCCgUCGu -3' miRNA: 3'- gCG-GCUaGUGCgGAcGUGGCGGG-AGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 33263 | 0.67 | 0.39133 |
Target: 5'- gCGCCGAUCaggugcucgACGCaaGCGCCGgCCg-- -3' miRNA: 3'- -GCGGCUAG---------UGCGgaCGUGGCgGGagc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 33431 | 0.7 | 0.250204 |
Target: 5'- aCGUCGuugCACGCCUGCGCgGUagUCGa -3' miRNA: 3'- -GCGGCua-GUGCGGACGUGgCGggAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 33770 | 0.66 | 0.426966 |
Target: 5'- uGUCGAagUGCGCCgGCGCCGaCUUCGu -3' miRNA: 3'- gCGGCUa-GUGCGGaCGUGGCgGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 33798 | 0.69 | 0.275987 |
Target: 5'- aGUCGAUCGCGCCguucGUaAUCGCCCg-- -3' miRNA: 3'- gCGGCUAGUGCGGa---CG-UGGCGGGagc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 35383 | 1.08 | 0.000372 |
Target: 5'- gCGCCGAUCACGCCUGCACCGCCCUCGu -3' miRNA: 3'- -GCGGCUAGUGCGGACGUGGCGGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 35482 | 0.69 | 0.275987 |
Target: 5'- aCGCCGAUCgAUGCCaUGUACuugCGUCCgUCGa -3' miRNA: 3'- -GCGGCUAG-UGCGG-ACGUG---GCGGG-AGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 36286 | 0.68 | 0.303849 |
Target: 5'- aCGCCGGaaucgacgUCACGCCgaGCG-CGUUCUCGg -3' miRNA: 3'- -GCGGCU--------AGUGCGGa-CGUgGCGGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 36838 | 0.68 | 0.333824 |
Target: 5'- uGgCGAUCGCGaCUUGCuuuGCCGCguccgCCUCGg -3' miRNA: 3'- gCgGCUAGUGC-GGACG---UGGCG-----GGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 37052 | 0.67 | 0.374255 |
Target: 5'- aGCCGGU-GCGCCUGCGCCuGCg---- -3' miRNA: 3'- gCGGCUAgUGCGGACGUGG-CGggagc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 39431 | 0.66 | 0.445491 |
Target: 5'- uGCCGAUCGagccaucgGCCUGCA-CGCCgagCGa -3' miRNA: 3'- gCGGCUAGUg-------CGGACGUgGCGGga-GC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 40735 | 0.66 | 0.445491 |
Target: 5'- uCG-CGAUgACGCCaGCcuGCCGCCC-CGc -3' miRNA: 3'- -GCgGCUAgUGCGGaCG--UGGCGGGaGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 42321 | 0.67 | 0.349604 |
Target: 5'- cCG-CGAUCAgGCUcGCGggguucgacgauCCGCCCUCGa -3' miRNA: 3'- -GCgGCUAGUgCGGaCGU------------GGCGGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 42386 | 0.66 | 0.445491 |
Target: 5'- cCGCCGuugCGCGCCgGCGaauccccuccucCCGCgCUCc -3' miRNA: 3'- -GCGGCua-GUGCGGaCGU------------GGCGgGAGc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 42928 | 0.68 | 0.3141 |
Target: 5'- aCGCCGA-CGCGCCaGUcggccugcaacgcgaGCCGCUgCUCGa -3' miRNA: 3'- -GCGGCUaGUGCGGaCG---------------UGGCGG-GAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 42978 | 0.69 | 0.262839 |
Target: 5'- gCGCuCGcgCGCGaCCUGCuCCG-CCUCGg -3' miRNA: 3'- -GCG-GCuaGUGC-GGACGuGGCgGGAGC- -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 43222 | 0.68 | 0.311145 |
Target: 5'- gCGUCGAUCuGCGCaCUGCGCU-CCUUCa -3' miRNA: 3'- -GCGGCUAG-UGCG-GACGUGGcGGGAGc -5' |
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24846 | 3' | -61.1 | NC_005284.1 | + | 43859 | 0.68 | 0.341648 |
Target: 5'- gGCCGGccaugCGgGCCUGCGCaucauucgCGCCCUUc -3' miRNA: 3'- gCGGCUa----GUgCGGACGUG--------GCGGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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