miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 3' -61.1 NC_005284.1 + 54375 0.69 0.269348
Target:  5'- gCGCCGAaacuCGCCauuUGCGCCGCCgCUUc -3'
miRNA:   3'- -GCGGCUagu-GCGG---ACGUGGCGG-GAGc -5'
24846 3' -61.1 NC_005284.1 + 53456 0.69 0.275987
Target:  5'- aGCCGAaaagcUCGuCGUCUgGCACCGuCCCUuCGa -3'
miRNA:   3'- gCGGCU-----AGU-GCGGA-CGUGGC-GGGA-GC- -5'
24846 3' -61.1 NC_005284.1 + 51470 0.69 0.267382
Target:  5'- aCGCCGcUCG-GCCUGCACUaucggcucgcaacaGCCCUuCGa -3'
miRNA:   3'- -GCGGCuAGUgCGGACGUGG--------------CGGGA-GC- -5'
24846 3' -61.1 NC_005284.1 + 50154 0.69 0.282756
Target:  5'- uGCCGcUCACGCC-GCuGCCGaCCgUCGc -3'
miRNA:   3'- gCGGCuAGUGCGGaCG-UGGC-GGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 48917 0.66 0.445491
Target:  5'- aGCCGAUUGCGUUgcgGCGCCGauguagaUCUUGa -3'
miRNA:   3'- gCGGCUAGUGCGGa--CGUGGCg------GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 47916 0.73 0.157911
Target:  5'- --aCGAUCACGCUcacCGCCGCCCUCc -3'
miRNA:   3'- gcgGCUAGUGCGGac-GUGGCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 46900 0.67 0.365081
Target:  5'- uCGCCGAcgucggcUCGCGCaCUGCGaucuuuUCGCCaCUCc -3'
miRNA:   3'- -GCGGCU-------AGUGCG-GACGU------GGCGG-GAGc -5'
24846 3' -61.1 NC_005284.1 + 46774 0.66 0.417877
Target:  5'- aGCCGcgCAuuCGCCUGCAugugcgcgUCGUCaCUCGc -3'
miRNA:   3'- gCGGCuaGU--GCGGACGU--------GGCGG-GAGC- -5'
24846 3' -61.1 NC_005284.1 + 46133 0.69 0.275987
Target:  5'- aCGCCGcAUC-CGCUgUGCGcCCGCCgUCGc -3'
miRNA:   3'- -GCGGC-UAGuGCGG-ACGU-GGCGGgAGC- -5'
24846 3' -61.1 NC_005284.1 + 45290 0.69 0.296687
Target:  5'- gCGCCGAccCACGCUguCGCCGCCUgcgUCGc -3'
miRNA:   3'- -GCGGCUa-GUGCGGacGUGGCGGG---AGC- -5'
24846 3' -61.1 NC_005284.1 + 45228 0.71 0.194407
Target:  5'- uGgCGAgCGCuGCCUGCGCCG-CCUCGu -3'
miRNA:   3'- gCgGCUaGUG-CGGACGUGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 45012 0.7 0.256458
Target:  5'- gCGCCGuugCGacgugaGCUUGCGCCGUcgCCUCGa -3'
miRNA:   3'- -GCGGCua-GUg-----CGGACGUGGCG--GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 44116 0.72 0.184644
Target:  5'- uGUCGAUCGCGCCcGCGgCGCgcaccaguuCCUCGc -3'
miRNA:   3'- gCGGCUAGUGCGGaCGUgGCG---------GGAGC- -5'
24846 3' -61.1 NC_005284.1 + 43998 0.66 0.436172
Target:  5'- cCGCCGGcgaagaaguuguUCGCGUCagaaaGCAgccgaaCGCCCUCGg -3'
miRNA:   3'- -GCGGCU------------AGUGCGGa----CGUg-----GCGGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 43859 0.68 0.341648
Target:  5'- gGCCGGccaugCGgGCCUGCGCaucauucgCGCCCUUc -3'
miRNA:   3'- gCGGCUa----GUgCGGACGUG--------GCGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 43222 0.68 0.311145
Target:  5'- gCGUCGAUCuGCGCaCUGCGCU-CCUUCa -3'
miRNA:   3'- -GCGGCUAG-UGCG-GACGUGGcGGGAGc -5'
24846 3' -61.1 NC_005284.1 + 42978 0.69 0.262839
Target:  5'- gCGCuCGcgCGCGaCCUGCuCCG-CCUCGg -3'
miRNA:   3'- -GCG-GCuaGUGC-GGACGuGGCgGGAGC- -5'
24846 3' -61.1 NC_005284.1 + 42928 0.68 0.3141
Target:  5'- aCGCCGA-CGCGCCaGUcggccugcaacgcgaGCCGCUgCUCGa -3'
miRNA:   3'- -GCGGCUaGUGCGGaCG---------------UGGCGG-GAGC- -5'
24846 3' -61.1 NC_005284.1 + 42386 0.66 0.445491
Target:  5'- cCGCCGuugCGCGCCgGCGaauccccuccucCCGCgCUCc -3'
miRNA:   3'- -GCGGCua-GUGCGGaCGU------------GGCGgGAGc -5'
24846 3' -61.1 NC_005284.1 + 42321 0.67 0.349604
Target:  5'- cCG-CGAUCAgGCUcGCGggguucgacgauCCGCCCUCGa -3'
miRNA:   3'- -GCgGCUAGUgCGGaCGU------------GGCGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.