miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 27648 0.66 0.913716
Target:  5'- cGC-AGUUGCaUCGCAGAUgcgucgcgGCGGGCAc -3'
miRNA:   3'- cCGcUUAGCGaAGCGUCUG--------UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 1100 0.66 0.913716
Target:  5'- cGGC-AGUCGCUUCG-AGcCGCugauuGGCAa -3'
miRNA:   3'- -CCGcUUAGCGAAGCgUCuGUGu----UCGU- -5'
24846 5' -51.2 NC_005284.1 + 7159 0.66 0.909743
Target:  5'- gGGCGAca-GCUUCGCAagcuucagcgcgugcGACACA-GUg -3'
miRNA:   3'- -CCGCUuagCGAAGCGU---------------CUGUGUuCGu -5'
24846 5' -51.2 NC_005284.1 + 28877 0.66 0.907036
Target:  5'- cGGuCGAA-CGCUgCGCAGugAgGuAGCAg -3'
miRNA:   3'- -CC-GCUUaGCGAaGCGUCugUgU-UCGU- -5'
24846 5' -51.2 NC_005284.1 + 8329 0.66 0.907036
Target:  5'- cGCgGAAUCGCcggUUGCAGACGaucguGCGg -3'
miRNA:   3'- cCG-CUUAGCGa--AGCGUCUGUguu--CGU- -5'
24846 5' -51.2 NC_005284.1 + 3056 0.66 0.900067
Target:  5'- cGGUGAuguccaGUUGCU--GgAGACGCGGGCAu -3'
miRNA:   3'- -CCGCU------UAGCGAagCgUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 40865 0.66 0.900067
Target:  5'- uGGCGGAUCGgaUUGCcgAGuucaGCGCgGAGCAu -3'
miRNA:   3'- -CCGCUUAGCgaAGCG--UC----UGUG-UUCGU- -5'
24846 5' -51.2 NC_005284.1 + 8613 0.66 0.900067
Target:  5'- cGGCGAGUucgccuucCGUUUCGUccacaacggAGGCGguGGCAg -3'
miRNA:   3'- -CCGCUUA--------GCGAAGCG---------UCUGUguUCGU- -5'
24846 5' -51.2 NC_005284.1 + 7357 0.66 0.900067
Target:  5'- cGGCGAGUCcuCUUCGCGGAUcucguuCGuGCu -3'
miRNA:   3'- -CCGCUUAGc-GAAGCGUCUGu-----GUuCGu -5'
24846 5' -51.2 NC_005284.1 + 10609 0.66 0.892811
Target:  5'- gGGCGAcugaucgacCGCUUCGUgucGGCgACGAGCGg -3'
miRNA:   3'- -CCGCUua-------GCGAAGCGu--CUG-UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37095 0.66 0.892811
Target:  5'- cGGCGAgauucagggcGUCGCgcacgaUCGC--GCGCAGGUAg -3'
miRNA:   3'- -CCGCU----------UAGCGa-----AGCGucUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 21347 0.66 0.892811
Target:  5'- uGCGGAUCGaCUaccgCGCAGGCGu--GCAa -3'
miRNA:   3'- cCGCUUAGC-GAa---GCGUCUGUguuCGU- -5'
24846 5' -51.2 NC_005284.1 + 10647 0.66 0.89207
Target:  5'- cGGCGAAgCGCUgCGCgAGGaacuggugcgcgcCGCGGGCGc -3'
miRNA:   3'- -CCGCUUaGCGAaGCG-UCU-------------GUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 32678 0.66 0.885274
Target:  5'- cGGCGGGg-GCca-GCGGAcCGCAAGCGc -3'
miRNA:   3'- -CCGCUUagCGaagCGUCU-GUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 53344 0.66 0.87746
Target:  5'- uGCGGcuGUCGCUUCGCcaGCGCA-GUg -3'
miRNA:   3'- cCGCU--UAGCGAAGCGucUGUGUuCGu -5'
24846 5' -51.2 NC_005284.1 + 48175 0.67 0.869376
Target:  5'- uGGCGAAgugaCGCccgUUGCGGugACAgcucgcgcAGCGg -3'
miRNA:   3'- -CCGCUUa---GCGa--AGCGUCugUGU--------UCGU- -5'
24846 5' -51.2 NC_005284.1 + 21336 0.67 0.869376
Target:  5'- uGGCGGggCGCgugUCGCGcGAUcaACGAGUc -3'
miRNA:   3'- -CCGCUuaGCGa--AGCGU-CUG--UGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 23366 0.67 0.86103
Target:  5'- cGGCGcacGUCGCc-CGCGaacuGGCGCAAGCc -3'
miRNA:   3'- -CCGCu--UAGCGaaGCGU----CUGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9145 0.67 0.86103
Target:  5'- cGCGGAU-GCUaUCGCGcgcGGCAUggGCAa -3'
miRNA:   3'- cCGCUUAgCGA-AGCGU---CUGUGuuCGU- -5'
24846 5' -51.2 NC_005284.1 + 23050 0.67 0.852428
Target:  5'- aGCGcuAUCGCUggcUGCGGGaGCGAGCAu -3'
miRNA:   3'- cCGCu-UAGCGAa--GCGUCUgUGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.