miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 15085 0.68 0.78486
Target:  5'- aGGCGcAcgCGC-UCGCAGaguauccGCGCGAGUg -3'
miRNA:   3'- -CCGC-UuaGCGaAGCGUC-------UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9473 0.68 0.785881
Target:  5'- gGGC-AAUcCGCagUCGCGgcGACGCAGGCGg -3'
miRNA:   3'- -CCGcUUA-GCGa-AGCGU--CUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 7875 0.68 0.795992
Target:  5'- uGGCGAAaaGa-UCGCAGuGCGCGAGCc -3'
miRNA:   3'- -CCGCUUagCgaAGCGUC-UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 35968 0.68 0.805921
Target:  5'- uGGUGAugcUCGCUUCGCGaACAaucAGCGu -3'
miRNA:   3'- -CCGCUu--AGCGAAGCGUcUGUgu-UCGU- -5'
24846 5' -51.2 NC_005284.1 + 4645 0.68 0.805921
Target:  5'- cGGCGuGAgcggcagcaacUCGCUggucgUCGCGGACcguCAAGCGg -3'
miRNA:   3'- -CCGC-UU-----------AGCGA-----AGCGUCUGu--GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9235 0.68 0.815655
Target:  5'- gGGCGAcgCGCcaCGCGGcggcauagaGCGCgGAGCAu -3'
miRNA:   3'- -CCGCUuaGCGaaGCGUC---------UGUG-UUCGU- -5'
24846 5' -51.2 NC_005284.1 + 50276 0.68 0.825183
Target:  5'- aGGCG-AUCGUgaaGCGGAU-CAAGCGg -3'
miRNA:   3'- -CCGCuUAGCGaagCGUCUGuGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 13706 0.67 0.834495
Target:  5'- gGGaCGAAgaagaCGUUUaCGCAGGCGCAGGa- -3'
miRNA:   3'- -CC-GCUUa----GCGAA-GCGUCUGUGUUCgu -5'
24846 5' -51.2 NC_005284.1 + 15626 0.67 0.84358
Target:  5'- cGGCGAcgUGCUgcugaUGCAGAucCGCA-GCAa -3'
miRNA:   3'- -CCGCUuaGCGAa----GCGUCU--GUGUuCGU- -5'
24846 5' -51.2 NC_005284.1 + 34525 0.67 0.851554
Target:  5'- uGGCGAugccGUUGCgggUGUAGucguccaACACGAGCAu -3'
miRNA:   3'- -CCGCU----UAGCGaa-GCGUC-------UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 23050 0.67 0.852428
Target:  5'- aGCGcuAUCGCUggcUGCGGGaGCGAGCAu -3'
miRNA:   3'- cCGCu-UAGCGAa--GCGUCUgUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 23366 0.67 0.86103
Target:  5'- cGGCGcacGUCGCc-CGCGaacuGGCGCAAGCc -3'
miRNA:   3'- -CCGCu--UAGCGaaGCGU----CUGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9145 0.67 0.86103
Target:  5'- cGCGGAU-GCUaUCGCGcgcGGCAUggGCAa -3'
miRNA:   3'- cCGCUUAgCGA-AGCGU---CUGUGuuCGU- -5'
24846 5' -51.2 NC_005284.1 + 48175 0.67 0.869376
Target:  5'- uGGCGAAgugaCGCccgUUGCGGugACAgcucgcgcAGCGg -3'
miRNA:   3'- -CCGCUUa---GCGa--AGCGUCugUGU--------UCGU- -5'
24846 5' -51.2 NC_005284.1 + 21336 0.67 0.869376
Target:  5'- uGGCGGggCGCgugUCGCGcGAUcaACGAGUc -3'
miRNA:   3'- -CCGCUuaGCGa--AGCGU-CUG--UGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 53344 0.66 0.87746
Target:  5'- uGCGGcuGUCGCUUCGCcaGCGCA-GUg -3'
miRNA:   3'- cCGCU--UAGCGAAGCGucUGUGUuCGu -5'
24846 5' -51.2 NC_005284.1 + 32678 0.66 0.885274
Target:  5'- cGGCGGGg-GCca-GCGGAcCGCAAGCGc -3'
miRNA:   3'- -CCGCUUagCGaagCGUCU-GUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 10647 0.66 0.89207
Target:  5'- cGGCGAAgCGCUgCGCgAGGaacuggugcgcgcCGCGGGCGc -3'
miRNA:   3'- -CCGCUUaGCGAaGCG-UCU-------------GUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37095 0.66 0.892811
Target:  5'- cGGCGAgauucagggcGUCGCgcacgaUCGC--GCGCAGGUAg -3'
miRNA:   3'- -CCGCU----------UAGCGa-----AGCGucUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 10609 0.66 0.892811
Target:  5'- gGGCGAcugaucgacCGCUUCGUgucGGCgACGAGCGg -3'
miRNA:   3'- -CCGCUua-------GCGAAGCGu--CUG-UGUUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.