miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 34525 0.67 0.851554
Target:  5'- uGGCGAugccGUUGCgggUGUAGucguccaACACGAGCAu -3'
miRNA:   3'- -CCGCU----UAGCGaa-GCGUC-------UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 15626 0.67 0.84358
Target:  5'- cGGCGAcgUGCUgcugaUGCAGAucCGCA-GCAa -3'
miRNA:   3'- -CCGCUuaGCGAa----GCGUCU--GUGUuCGU- -5'
24846 5' -51.2 NC_005284.1 + 13706 0.67 0.834495
Target:  5'- gGGaCGAAgaagaCGUUUaCGCAGGCGCAGGa- -3'
miRNA:   3'- -CC-GCUUa----GCGAA-GCGUCUGUGUUCgu -5'
24846 5' -51.2 NC_005284.1 + 50276 0.68 0.825183
Target:  5'- aGGCG-AUCGUgaaGCGGAU-CAAGCGg -3'
miRNA:   3'- -CCGCuUAGCGaagCGUCUGuGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9235 0.68 0.815655
Target:  5'- gGGCGAcgCGCcaCGCGGcggcauagaGCGCgGAGCAu -3'
miRNA:   3'- -CCGCUuaGCGaaGCGUC---------UGUG-UUCGU- -5'
24846 5' -51.2 NC_005284.1 + 35968 0.68 0.805921
Target:  5'- uGGUGAugcUCGCUUCGCGaACAaucAGCGu -3'
miRNA:   3'- -CCGCUu--AGCGAAGCGUcUGUgu-UCGU- -5'
24846 5' -51.2 NC_005284.1 + 4645 0.68 0.805921
Target:  5'- cGGCGuGAgcggcagcaacUCGCUggucgUCGCGGACcguCAAGCGg -3'
miRNA:   3'- -CCGC-UU-----------AGCGA-----AGCGUCUGu--GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 7875 0.68 0.795992
Target:  5'- uGGCGAAaaGa-UCGCAGuGCGCGAGCc -3'
miRNA:   3'- -CCGCUUagCgaAGCGUC-UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 9473 0.68 0.785881
Target:  5'- gGGC-AAUcCGCagUCGCGgcGACGCAGGCGg -3'
miRNA:   3'- -CCGcUUA-GCGa-AGCGU--CUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 15085 0.68 0.78486
Target:  5'- aGGCGcAcgCGC-UCGCAGaguauccGCGCGAGUg -3'
miRNA:   3'- -CCGC-UuaGCGaAGCGUC-------UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 47806 0.69 0.7756
Target:  5'- gGGCGAG-CGCUUgGCGG-CGCu-GCGa -3'
miRNA:   3'- -CCGCUUaGCGAAgCGUCuGUGuuCGU- -5'
24846 5' -51.2 NC_005284.1 + 28379 0.69 0.765159
Target:  5'- aGCGAcGagGCUUUGCGGGCAacagcCGAGCAu -3'
miRNA:   3'- cCGCU-UagCGAAGCGUCUGU-----GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 48259 0.69 0.765159
Target:  5'- cGGCGcGUUGCcgUGCGGGCACugagGAGCc -3'
miRNA:   3'- -CCGCuUAGCGaaGCGUCUGUG----UUCGu -5'
24846 5' -51.2 NC_005284.1 + 31823 0.69 0.754574
Target:  5'- gGGCGAgaAUUGCUUC-CAGuucuucCGCAAGCu -3'
miRNA:   3'- -CCGCU--UAGCGAAGcGUCu-----GUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 45787 0.69 0.754574
Target:  5'- cGCGAccgccUUGCUgaUCGUGGugACAAGCGg -3'
miRNA:   3'- cCGCUu----AGCGA--AGCGUCugUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9524 0.69 0.733015
Target:  5'- cGGCGAG-CGCUcgUCGaggAGACGauCAAGCAa -3'
miRNA:   3'- -CCGCUUaGCGA--AGCg--UCUGU--GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 9858 0.69 0.731925
Target:  5'- cGGCGAucAUCGC-UCGCgAGACgGCAgccgcacAGCAg -3'
miRNA:   3'- -CCGCU--UAGCGaAGCG-UCUG-UGU-------UCGU- -5'
24846 5' -51.2 NC_005284.1 + 16862 0.7 0.699899
Target:  5'- cGGCGggUCGUaugCGCAGGUGCuGGCc -3'
miRNA:   3'- -CCGCuuAGCGaa-GCGUCUGUGuUCGu -5'
24846 5' -51.2 NC_005284.1 + 4046 0.7 0.688703
Target:  5'- cGGCGGAuugccaUCGCUUC-CGGAauuCGAGCGg -3'
miRNA:   3'- -CCGCUU------AGCGAAGcGUCUgu-GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 37852 0.71 0.66615
Target:  5'- gGGUGAGUCGUcgugcuaggaUUCGCAaaaaAUACAAGCGg -3'
miRNA:   3'- -CCGCUUAGCG----------AAGCGUc---UGUGUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.