Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24846 | 5' | -51.2 | NC_005284.1 | + | 1100 | 0.66 | 0.913716 |
Target: 5'- cGGC-AGUCGCUUCG-AGcCGCugauuGGCAa -3' miRNA: 3'- -CCGcUUAGCGAAGCgUCuGUGu----UCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 3056 | 0.66 | 0.900067 |
Target: 5'- cGGUGAuguccaGUUGCU--GgAGACGCGGGCAu -3' miRNA: 3'- -CCGCU------UAGCGAagCgUCUGUGUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 4046 | 0.7 | 0.688703 |
Target: 5'- cGGCGGAuugccaUCGCUUC-CGGAauuCGAGCGg -3' miRNA: 3'- -CCGCUU------AGCGAAGcGUCUgu-GUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 4645 | 0.68 | 0.805921 |
Target: 5'- cGGCGuGAgcggcagcaacUCGCUggucgUCGCGGACcguCAAGCGg -3' miRNA: 3'- -CCGC-UU-----------AGCGA-----AGCGUCUGu--GUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 7159 | 0.66 | 0.909743 |
Target: 5'- gGGCGAca-GCUUCGCAagcuucagcgcgugcGACACA-GUg -3' miRNA: 3'- -CCGCUuagCGAAGCGU---------------CUGUGUuCGu -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 7357 | 0.66 | 0.900067 |
Target: 5'- cGGCGAGUCcuCUUCGCGGAUcucguuCGuGCu -3' miRNA: 3'- -CCGCUUAGc-GAAGCGUCUGu-----GUuCGu -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 7875 | 0.68 | 0.795992 |
Target: 5'- uGGCGAAaaGa-UCGCAGuGCGCGAGCc -3' miRNA: 3'- -CCGCUUagCgaAGCGUC-UGUGUUCGu -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 8329 | 0.66 | 0.907036 |
Target: 5'- cGCgGAAUCGCcggUUGCAGACGaucguGCGg -3' miRNA: 3'- cCG-CUUAGCGa--AGCGUCUGUguu--CGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 8613 | 0.66 | 0.900067 |
Target: 5'- cGGCGAGUucgccuucCGUUUCGUccacaacggAGGCGguGGCAg -3' miRNA: 3'- -CCGCUUA--------GCGAAGCG---------UCUGUguUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9145 | 0.67 | 0.86103 |
Target: 5'- cGCGGAU-GCUaUCGCGcgcGGCAUggGCAa -3' miRNA: 3'- cCGCUUAgCGA-AGCGU---CUGUGuuCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9235 | 0.68 | 0.815655 |
Target: 5'- gGGCGAcgCGCcaCGCGGcggcauagaGCGCgGAGCAu -3' miRNA: 3'- -CCGCUuaGCGaaGCGUC---------UGUG-UUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9343 | 0.77 | 0.326769 |
Target: 5'- cGGCGAGUCGgaUCaagcgaCGGGCGCGAGCGc -3' miRNA: 3'- -CCGCUUAGCgaAGc-----GUCUGUGUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9433 | 0.71 | 0.643461 |
Target: 5'- cGGCGuGUCGC-UCGCGG-C-CGGGCGg -3' miRNA: 3'- -CCGCuUAGCGaAGCGUCuGuGUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9473 | 0.68 | 0.785881 |
Target: 5'- gGGC-AAUcCGCagUCGCGgcGACGCAGGCGg -3' miRNA: 3'- -CCGcUUA-GCGa-AGCGU--CUGUGUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9524 | 0.69 | 0.733015 |
Target: 5'- cGGCGAG-CGCUcgUCGaggAGACGauCAAGCAa -3' miRNA: 3'- -CCGCUUaGCGA--AGCg--UCUGU--GUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9636 | 0.71 | 0.632093 |
Target: 5'- cGGCGGAg-GCUucagCGCAGGC-CGAGCu -3' miRNA: 3'- -CCGCUUagCGAa---GCGUCUGuGUUCGu -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 9858 | 0.69 | 0.731925 |
Target: 5'- cGGCGAucAUCGC-UCGCgAGACgGCAgccgcacAGCAg -3' miRNA: 3'- -CCGCU--UAGCGaAGCG-UCUG-UGU-------UCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 10609 | 0.66 | 0.892811 |
Target: 5'- gGGCGAcugaucgacCGCUUCGUgucGGCgACGAGCGg -3' miRNA: 3'- -CCGCUua-------GCGAAGCGu--CUG-UGUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 10647 | 0.66 | 0.89207 |
Target: 5'- cGGCGAAgCGCUgCGCgAGGaacuggugcgcgcCGCGGGCGc -3' miRNA: 3'- -CCGCUUaGCGAaGCG-UCU-------------GUGUUCGU- -5' |
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24846 | 5' | -51.2 | NC_005284.1 | + | 10697 | 0.87 | 0.07403 |
Target: 5'- cGGCGGGccUCGCUUCGCAGaaaggcGCGCAGGCAc -3' miRNA: 3'- -CCGCUU--AGCGAAGCGUC------UGUGUUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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