miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24846 5' -51.2 NC_005284.1 + 13706 0.67 0.834495
Target:  5'- gGGaCGAAgaagaCGUUUaCGCAGGCGCAGGa- -3'
miRNA:   3'- -CC-GCUUa----GCGAA-GCGUCUGUGUUCgu -5'
24846 5' -51.2 NC_005284.1 + 14709 0.71 0.643461
Target:  5'- uGGCGGAUCGa---GCAGAagagcgACGAGCAg -3'
miRNA:   3'- -CCGCUUAGCgaagCGUCUg-----UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 15085 0.68 0.78486
Target:  5'- aGGCGcAcgCGC-UCGCAGaguauccGCGCGAGUg -3'
miRNA:   3'- -CCGC-UuaGCGaAGCGUC-------UGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 15239 0.71 0.620726
Target:  5'- gGGCGAgauuGUCGCUcucguucauUCGCAucccGGCGCAucGGCAc -3'
miRNA:   3'- -CCGCU----UAGCGA---------AGCGU----CUGUGU--UCGU- -5'
24846 5' -51.2 NC_005284.1 + 15626 0.67 0.84358
Target:  5'- cGGCGAcgUGCUgcugaUGCAGAucCGCA-GCAa -3'
miRNA:   3'- -CCGCUuaGCGAa----GCGUCU--GUGUuCGU- -5'
24846 5' -51.2 NC_005284.1 + 15809 0.71 0.651411
Target:  5'- aGCGAGaCGCUUCGCAugauaaggcuguacGGCACGcucGGCGu -3'
miRNA:   3'- cCGCUUaGCGAAGCGU--------------CUGUGU---UCGU- -5'
24846 5' -51.2 NC_005284.1 + 16862 0.7 0.699899
Target:  5'- cGGCGggUCGUaugCGCAGGUGCuGGCc -3'
miRNA:   3'- -CCGCuuAGCGaa-GCGUCUGUGuUCGu -5'
24846 5' -51.2 NC_005284.1 + 17721 0.78 0.280142
Target:  5'- cGGCGu-UCgGCUgcacgUCGCAGGCGCAGGCGc -3'
miRNA:   3'- -CCGCuuAG-CGA-----AGCGUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 21336 0.67 0.869376
Target:  5'- uGGCGGggCGCgugUCGCGcGAUcaACGAGUc -3'
miRNA:   3'- -CCGCUuaGCGa--AGCGU-CUG--UGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 21347 0.66 0.892811
Target:  5'- uGCGGAUCGaCUaccgCGCAGGCGu--GCAa -3'
miRNA:   3'- cCGCUUAGC-GAa---GCGUCUGUguuCGU- -5'
24846 5' -51.2 NC_005284.1 + 23050 0.67 0.852428
Target:  5'- aGCGcuAUCGCUggcUGCGGGaGCGAGCAu -3'
miRNA:   3'- cCGCu-UAGCGAa--GCGUCUgUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 23366 0.67 0.86103
Target:  5'- cGGCGcacGUCGCc-CGCGaacuGGCGCAAGCc -3'
miRNA:   3'- -CCGCu--UAGCGaaGCGU----CUGUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 27648 0.66 0.913716
Target:  5'- cGC-AGUUGCaUCGCAGAUgcgucgcgGCGGGCAc -3'
miRNA:   3'- cCGcUUAGCGaAGCGUCUG--------UGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 28379 0.69 0.765159
Target:  5'- aGCGAcGagGCUUUGCGGGCAacagcCGAGCAu -3'
miRNA:   3'- cCGCU-UagCGAAGCGUCUGU-----GUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 28877 0.66 0.907036
Target:  5'- cGGuCGAA-CGCUgCGCAGugAgGuAGCAg -3'
miRNA:   3'- -CC-GCUUaGCGAaGCGUCugUgU-UCGU- -5'
24846 5' -51.2 NC_005284.1 + 31823 0.69 0.754574
Target:  5'- gGGCGAgaAUUGCUUC-CAGuucuucCGCAAGCu -3'
miRNA:   3'- -CCGCU--UAGCGAAGcGUCu-----GUGUUCGu -5'
24846 5' -51.2 NC_005284.1 + 32678 0.66 0.885274
Target:  5'- cGGCGGGg-GCca-GCGGAcCGCAAGCGc -3'
miRNA:   3'- -CCGCUUagCGaagCGUCU-GUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 34525 0.67 0.851554
Target:  5'- uGGCGAugccGUUGCgggUGUAGucguccaACACGAGCAu -3'
miRNA:   3'- -CCGCU----UAGCGaa-GCGUC-------UGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 35417 1.12 0.001665
Target:  5'- cGGCGAAUCGCUUCGCAGACACAAGCAc -3'
miRNA:   3'- -CCGCUUAGCGAAGCGUCUGUGUUCGU- -5'
24846 5' -51.2 NC_005284.1 + 35968 0.68 0.805921
Target:  5'- uGGUGAugcUCGCUUCGCGaACAaucAGCGu -3'
miRNA:   3'- -CCGCUu--AGCGAAGCGUcUGUgu-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.